Description Usage Arguments Author(s) Examples
Plot the cell count for each population using CytomeTree.
1 2 | plot_cytopop(AnnotObj, nbpop = 10, mincount = 1, maxcount = NULL,
y_axis = c("abs_count", "prop"))
|
AnnotObj |
An object of class Annotation. |
nbpop |
Number indicating the maximum of population plotted.
Default is |
mincount |
Number indicating the minimum of cell count
for the populations. Default is |
maxcount |
Number indicating the maximum of cell count
for the populations. Default is |
y_axis |
a character string either |
Anthony Devaux, Boris Hejblum
1 2 3 4 5 6 7 8 | # Run CytomeTree
data(DLBCL)
cellevents <- DLBCL[,c("FL1", "FL2", "FL4")]
Tree <- CytomeTree(cellevents, minleaf = 1, t=.1)
Annot <- Annotation(Tree,plot=FALSE)
# Plot the cell count
plot_cytopop(Annot)
|
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