vis.immunr_ov_matrix: Overlap / gene usage distance visualisation

In charlotterich/immunarch_code: Painless Bioinformatics Analysis of T-Cell and B-Cell Immune Repertoires in R

Description

Visualise matrices with overlap values or gene usage distances among samples. For details see links below.

Usage

## S3 method for class 'immunr_ov_matrix'
vis(.data, .plot = c("heatmap", "heatmap2", "circos", "radar"), ...)

Arguments

.data	Output from repOverlap or geneUsageAnalysis.
.plot	A string specifying the plot type: - "heatmap" for heatmaps using vis_heatmap; - "heatmap2" for heatmaps using vis_heatmap2; - "circos" for circos plots using vis_circos; - "radar" for polar area plots using vis_radar.
...	Other arguments are passed through to the underlying plotting function: - "heatmap" - passes arguments to vis_heatmap; - "heatmap2" - passes arguments to vis_heatmap2 and heatmap from the "heatmap3" package; - "circos" - passes arguments to vis_circos and chordDiagram from the "circlize" package; - "radar"- passes arguments to vis_radar.

charlotterich/immunarch_code documentation built on Jan. 24, 2020, 12:08 a.m.