assembleMirrorPlots: Assemble mirror plot Data

In chasemc/IDBacApp: MALDI-TOF MS Protien and Small Molecule Analysis

Assemble mirror plot Data

Description

Assemble mirror plot Data

Usage

assembleMirrorPlots(
  sampleID1,
  sampleID2,
  minFrequency,
  lowerMassCutoff,
  upperMassCutoff,
  minSNR,
  tolerance = 0.002,
  pool1,
  pool2,
  normalizeSpectra = FALSE,
  ...
)

Arguments

sampleID1	sample ID to search in IDBac sqlite database (will be positive spectrum)
sampleID2	sample ID to search in IDBac sqlite database (will be negative spectrum)
minFrequency	numeric between 0 and 100, minFrequency
lowerMassCutoff	lowerMassCutoff
upperMassCutoff	upperMassCutoff
minSNR	numeric, peaks with a SNR below this number will be removed
tolerance	MALDIquant binning tolerance for intra-sample binning
pool1	pool that contains sample 1 (positive spectrum)
pool2	pool that contains sample 2 (negative spectrum)
normalizeSpectra	should spectra be normalized? TRUE/FALSE
...	advanced arguments for MALDIquant, see IDBacApp::normalizeSpectrumIntensity()

Value

environment containing mirror plot data

chasemc/IDBacApp documentation built on Oct. 22, 2022, 2:52 a.m.