createSpectraSQL: createSpectraSQL

In chasemc/IDBacApp: MALDI-TOF MS Protien and Small Molecule Analysis

createSpectraSQL

Description

createSpectraSQL

Usage

createSpectraSQL(
  mzML_con,
  pool,
  sampleID,
  XMLinfo,
  smallRangeEnd = 6000,
  acquisitionInfo,
  ...
)

Arguments

mzML_con	NA
pool	sqlite pool
sampleID	NA
XMLinfo	NA
smallRangeEnd	end of mass region for small mol, if m/z above this- will be classified as "protein" spectrum
acquisitionInfo	acquisitionInfo (currently only used when converting from Bruker raw data)
...	advanced arguments for MALDIquant, see IDBacApp::processSmallMolSpectra() and/or IDBacApp::processProteinSpectra()

Value

writes to sqlite database

chasemc/IDBacApp documentation built on Oct. 22, 2022, 2:52 a.m.