Man pages for chasemc/IDBacApp
Protein and small molecule analysis of bacteria by MALDI-TOF MS

beginWithMZbeginWithMZ
beginWithTXTbeginWithTXT
binnRbinnR
changeDendLinesColorchangeDendLinesColor
changeDendLinesWidthchangeDendLinesWidth
changeDendPartColorchangeDendPartColor
changeDendPartSizechangeDendPartSize
choose_dirChoose Directory, choose.dir vs tcltk
chooserInputchooserInput
collapseSmallMolReplicatescollapseSmallMolReplicates
colorBlindPalettecolorBlindPalette
colordendLabelscolordendLabels
colordendLabelsUIcolordendLabelsUI
colordendLinescolordendLines
colordendLinesServercolordendLinesServer
colordendLinesServercolordendLinesUIcolordendLinesServercolordendLinesUI
colordendLinesUIcolordendLinesUI
colored_dotscolored_dots I submitted this and it was pulled into...
compresscompress Settings for compressing in IDBac
conversionsUIconversionsUI
convertToMzmlConvert to mzML
copyToNewDatabaseCopy from one database to another, selecting by Sample ID
createMetaSQLcreateMetaSQL
createMZshacreateMZsha Given a mzR
createPoolCreate a pool connecton, given file names and a path If there...
createSpectraSQLcreateSpectraSQL
createXMLSQLcreateXMLSQL
decompressdecompress Settings for decompressing in IDBac, serialized...
dendrogramCreatordendrogramCreator
dendrogramCreatorUIdendrogramCreatorUI
distMatrixCreate Distance Matrix
dot-grepAcquDoubleValue.grepAcquDoubleValue
dot-grepAcquValue.grepAcquValue
dot-sampleName.sampleName
findAcquisitionInfofindAcquisitionInfo
findMSconvertfindMSconvert
findRawSHAandFilefindRawSHAandFile
getAllStrain_IDsfromSQLgetAllStrain_IDsfromSQL
getOSGet OS
getSmallMolPeakDatagetSmallMolPeakData
hashRhashR Settings for hashing in IDBac
insertMetadataColumnsInsert columns into IDBac SQLite metadata table
multipleMaldiPlatesmultipleMaldiPlates
networkViaBrushedDendrogramnetworkViaBrushedDendrogram
oneMaldiPlateoneMaldiPlate
parseDelimitedMSparseDelimitedMS
pcaCalculationPrinciple Components Analysis Given a data frame whose...
pcoaCalculationPrinciple Coordinates Analysis Given a data frame whose...
proteinPeaksToMatrixproteinPeaksToMatrix
readAcquFilereadAcquFile
runDendDotsRun Dend and dots
sampMetasampMeta
sampMetaOutputsampMetaOutput
searchNCBIsearchNCBI
serialserial Settings for serializing in IDBac
smallMolDFtoNetworkCollapse a sample's MALDIquant peak objects into a single...
spectraProcessingFunctionCreate IDBac SQLite database Should work for mzML, mzXML,...
sqlTableArchitecturesqlTableArchitecture
subtractMatrixBlankSubtract "matrix" sample masses from sample peak lists
tsneCalculationt-SNE Analysis Given a data frame whose columns are variables...
ui_proteinClusteringui_proteinClustering
ui_sqlUIui_sqlUI
chasemc/IDBacApp documentation built on Jan. 15, 2019, 9:12 a.m.