dot-getSmallPeaksFromBrush: Retrieve small molecule and matrix peak lists and make...

In chasemc/IDBacApp: MALDI-TOF MS Protien and Small Molecule Analysis

Retrieve small molecule and matrix peak lists and make consensus peak lists

Description

Retrieve small molecule and matrix peak lists and make consensus peak lists

Usage

.getSmallPeaksFromBrush(
  pool,
  sampleIDs = NULL,
  dendrogram,
  brushInputs,
  matrixIDs = NULL,
  minFrequency,
  lowerMassCutoff,
  upperMassCutoff,
  minSNR
)

Arguments

pool	pool
sampleIDs	character vector of IDs (currently not used)
dendrogram	protein dendrogram that was brushed
brushInputs	brusked dendrogram outputs
matrixIDs	sampleID that will be used as a matrix
minFrequency	peaks whose frequency of occurence in replicates below this are dropped
lowerMassCutoff	lower mass to retain
upperMassCutoff	upper mass to retain
minSNR	minimum SNR a peak must have to be retained

Value

a list containg two lists of MALDIquant peak objects "samplePeaks" and "matrixPeaks"

chasemc/IDBacApp documentation built on Oct. 22, 2022, 2:52 a.m.