db_from_bruker: Convert Bruker raw fids to IDBac database

In chasemc/IDBacApp: MALDI-TOF MS Protien and Small Molecule Analysis

Convert Bruker raw fids to IDBac database

Description

Convert Bruker raw fids to IDBac database

Usage

db_from_bruker(
  dataDirectory = NULL,
  fileName = NULL,
  filePath = NULL,
  anyMissing = NULL,
  acquisitionInfo = NULL,
  sampleMap = NULL,
  tempDir = NULL,
  ...
)

Arguments

dataDirectory	path to directory containing fids (warning: does a recursive path search for fids)
fileName	name of IDBac SQLite file
filePath	path where IDBac SQLite file will be written
anyMissing	advanced, mainly here to be used by the GUI code
acquisitionInfo	advanced, mainly here to be used by the GUI code
sampleMap	matrix or df representing the MALDI target plate (you can replace values in matrix created with IDBacApp:::map384Well())
tempDir	temporary folder with read/write permission to write intermediate mzml files to
...	advanced arguments for MALDIquant, see IDBacApp::processSmallMolSpectra() and/or IDBacApp::processProteinSpectra()

Value

none, side effect of writing SQLite file

chasemc/IDBacApp documentation built on Oct. 22, 2022, 2:52 a.m.