spectraProcessingFunction: Create IDBac SQLite database Should work for mzML, mzXML,...

In chasemc/IDBacApp: MALDI-TOF MS Protien and Small Molecule Analysis

Create IDBac SQLite database Should work for mzML, mzXML, mgf, and txt data input

Description

Create IDBac SQLite database Should work for mzML, mzXML, mgf, and txt data input

Usage

spectraProcessingFunction(
  rawDataFilePath,
  sampleID,
  pool,
  acquisitionInfo,
  ...
)

Arguments

rawDataFilePath	filepath of the data
sampleID	the sample ID to be read and added to the database
pool	database connection (checked out pool)
acquisitionInfo	acquisitionInfo (currently only used when converting from Bruker raw data)
...	advanced arguments for MALDIquant, see IDBacApp::processSmallMolSpectra() and/or IDBacApp::processProteinSpectra()

Value

the peak list modifed by binning then subtractng the matrix sample,

chasemc/IDBacApp documentation built on Oct. 22, 2022, 2:52 a.m.