Files in chernolab/ASpli
Analysis of Alternative Splicing Using RNA-Seq
DESCRIPTION
NAMESPACE
NEWS
R/ASDiscover_functions.R
R/ASpli_methods.R
R/ASpli_show_methods.R
R/DUreport_functions.R
R/binGenome_functions.R
R/bins_DEXSeq.R
R/common_functions.R
R/example_data.R
R/filterCounts.R
R/filter_functions.R
R/getConditions_function.R
R/jDUreport_functions.R
R/loadBam_function.R
R/mergeBinDUAS_functions.R
R/plotBins_functions.R
R/plotGenomeRegions_functions.R
R/readCounts_functions.R
R/splicingReport_functions.R
R/subset_methods.R
Readme.md
inst/extdata/A_C.bam
inst/extdata/A_C.bam.bai
inst/extdata/A_C_0.bam
inst/extdata/A_C_0.bam.bai
inst/extdata/A_C_1.bam
inst/extdata/A_C_1.bam.bai
inst/extdata/A_C_2.bam
inst/extdata/A_C_2.bam.bai
inst/extdata/A_D.bam
inst/extdata/A_D.bam.bai
inst/extdata/A_D_0.bam
inst/extdata/A_D_0.bam.bai
inst/extdata/A_D_1.bam
inst/extdata/A_D_1.bam.bai
inst/extdata/A_D_2.bam
inst/extdata/A_D_2.bam.bai
inst/extdata/B_C.bam
inst/extdata/B_C.bam.bai
inst/extdata/B_C_0.bam
inst/extdata/B_C_0.bam.bai
inst/extdata/B_C_1.bam
inst/extdata/B_C_1.bam.bai
inst/extdata/B_C_2.bam
inst/extdata/B_C_2.bam.bai
inst/extdata/B_D.bam
inst/extdata/B_D.bam.bai
inst/extdata/B_D_0.bam
inst/extdata/B_D_0.bam.bai
inst/extdata/B_D_1.bam
inst/extdata/B_D_1.bam.bai
inst/extdata/B_D_2.bam
inst/extdata/B_D_2.bam.bai
inst/extdata/genes.mini.gtf
man/ASpli-deprecated.Rd
man/ASpli-package.Rd
man/ASpliAS-class.Rd
man/ASpliCounts-class.Rd
man/ASpliCounts.Rd
man/ASpliDU-class.Rd
man/ASpliFeatures-class.Rd
man/ASpliIntegratedSignals-class.Rd
man/ASpliJDU-class.Rd
man/ASpliSplicingReport-class.Rd
man/DUreport.Rd
man/DUreport.norm.Rd
man/DUreport.offset.Rd
man/DUreportBinSplice-method.Rd
man/acc_AS.Rd
man/acc_DU.Rd
man/acc_JDU.Rd
man/acc_MergedReport.Rd
man/acc_counts.Rd
man/acc_features.Rd
man/acc_is.Rd
man/binGenome-methods.Rd
man/binGenome.Rd
man/containsJunctions-function.Rd
man/example_data.Rd
man/exportIntegratedSignals.Rd
man/exportSplicingReports.Rd
man/filterDU-method.Rd
man/filterSignals.Rd
man/gbCounts.Rd
man/gbDUreport-method.Rd
man/getConditions-function.Rd
man/integrateSignals.Rd
man/jCounts-methods.Rd
man/jDUreport.Rd
man/junctionDUreport.Rd
man/loadBAM.Rd
man/mergeBinDUAS-method.Rd
man/plotBins.Rd
man/plotGenomicRegions.Rd
man/rds.Rd
man/show-methods.Rd
man/splicingReport.Rd
man/subset-methods.Rd
man/write-methods.Rd
man/write.Rd
vignettes/ASpli.Rnw
vignettes/ASpli.bib
vignettes/ASpli.pdf
vignettes/ASpli.tex
vignettes/ASpli.toc
vignettes/ASpli_binFeatures.log
vignettes/LRR1_E005.png
vignettes/binDefinition.png
vignettes/create_plotbin_example1_data.R
vignettes/create_plotbin_example2_data.R
vignettes/images/GENE02_E002_gr.pdf
vignettes/images/GENE02_E002_pr.pdf
vignettes/images/GENE02_E002b_pr.pdf
vignettes/images/GENE10_E002_gr.pdf
vignettes/images/ZNF410_E013_gr.pdf
vignettes/images/aspliInteraction.png
vignettes/images/binDefinition.gtf
vignettes/images/binDefinition.pdf
vignettes/images/binDefinition.svg
vignettes/images/clusters_ok.pdf
vignettes/images/event_assignment.pdf
vignettes/images/event_assignment.svg
vignettes/images/fig1.pdf
vignettes/images/fig1.png
vignettes/images/fig1.svg
vignettes/images/fig1A.png
vignettes/images/fig2.png
vignettes/images/integrateSignals.png
vignettes/images/outputFolder.png
vignettes/images/pir.pdf
vignettes/images/pir_junc.pdf
vignettes/images/psi3ss.pdf
vignettes/images/psi5ss.pdf
vignettes/images/psi_junc.pdf
vignettes/images/psi_pir.svg
vignettes/images/psi_pir2.pdf
vignettes/images/psi_pir2.svg
vignettes/images/psi_pir_junc.pdf
vignettes/images/psi_pir_junc.svg
vignettes/images/psi_pir_junc_ok.pdf
vignettes/images/psies.pdf
vignettes/images/syntHTML.png
vignettes/images/wf.svg
vignettes/images/workflow.pdf
vignettes/images/workflow.svg
vignettes/images/workflow_ok.pdf
vignettes/pir.png
vignettes/psi_altSS.png
vignettes/psi_es.png
vignettes/venn.png
vignettes/wf.png
