Files in chernolab/ASpli
Analysis of Alternative Splicing Using RNA-Seq

DESCRIPTION
NAMESPACE
NEWS
R/ASDiscover_functions.R R/ASpli_methods.R R/ASpli_show_methods.R R/DUreport_functions.R R/binGenome_functions.R R/bins_DEXSeq.R R/common_functions.R R/example_data.R R/filterCounts.R R/filter_functions.R R/getConditions_function.R R/jDUreport_functions.R R/loadBam_function.R R/mergeBinDUAS_functions.R R/plotBins_functions.R R/plotGenomeRegions_functions.R R/readCounts_functions.R R/splicingReport_functions.R R/subset_methods.R Readme.md
inst/extdata/A_C.bam
inst/extdata/A_C.bam.bai
inst/extdata/A_C_0.bam
inst/extdata/A_C_0.bam.bai
inst/extdata/A_C_1.bam
inst/extdata/A_C_1.bam.bai
inst/extdata/A_C_2.bam
inst/extdata/A_C_2.bam.bai
inst/extdata/A_D.bam
inst/extdata/A_D.bam.bai
inst/extdata/A_D_0.bam
inst/extdata/A_D_0.bam.bai
inst/extdata/A_D_1.bam
inst/extdata/A_D_1.bam.bai
inst/extdata/A_D_2.bam
inst/extdata/A_D_2.bam.bai
inst/extdata/B_C.bam
inst/extdata/B_C.bam.bai
inst/extdata/B_C_0.bam
inst/extdata/B_C_0.bam.bai
inst/extdata/B_C_1.bam
inst/extdata/B_C_1.bam.bai
inst/extdata/B_C_2.bam
inst/extdata/B_C_2.bam.bai
inst/extdata/B_D.bam
inst/extdata/B_D.bam.bai
inst/extdata/B_D_0.bam
inst/extdata/B_D_0.bam.bai
inst/extdata/B_D_1.bam
inst/extdata/B_D_1.bam.bai
inst/extdata/B_D_2.bam
inst/extdata/B_D_2.bam.bai
inst/extdata/genes.mini.gtf
man/ASpli-deprecated.Rd man/ASpli-package.Rd man/ASpliAS-class.Rd man/ASpliCounts-class.Rd man/ASpliCounts.Rd man/ASpliDU-class.Rd man/ASpliFeatures-class.Rd man/ASpliIntegratedSignals-class.Rd man/ASpliJDU-class.Rd man/ASpliSplicingReport-class.Rd man/DUreport.Rd man/DUreport.norm.Rd man/DUreport.offset.Rd man/DUreportBinSplice-method.Rd man/acc_AS.Rd man/acc_DU.Rd man/acc_JDU.Rd man/acc_MergedReport.Rd man/acc_counts.Rd man/acc_features.Rd man/acc_is.Rd man/binGenome-methods.Rd man/binGenome.Rd man/containsJunctions-function.Rd man/example_data.Rd man/exportIntegratedSignals.Rd man/exportSplicingReports.Rd man/filterDU-method.Rd man/filterSignals.Rd man/gbCounts.Rd man/gbDUreport-method.Rd man/getConditions-function.Rd man/integrateSignals.Rd man/jCounts-methods.Rd man/jDUreport.Rd man/junctionDUreport.Rd man/loadBAM.Rd man/mergeBinDUAS-method.Rd man/plotBins.Rd man/plotGenomicRegions.Rd man/rds.Rd man/show-methods.Rd man/splicingReport.Rd man/subset-methods.Rd man/write-methods.Rd man/write.Rd
vignettes/ASpli.Rnw
vignettes/ASpli.bib
vignettes/ASpli.pdf
vignettes/ASpli.tex
vignettes/ASpli.toc
vignettes/ASpli_binFeatures.log
vignettes/LRR1_E005.png
vignettes/binDefinition.png
vignettes/create_plotbin_example1_data.R vignettes/create_plotbin_example2_data.R vignettes/images/GENE02_E002_gr.pdf vignettes/images/GENE02_E002_pr.pdf vignettes/images/GENE02_E002b_pr.pdf vignettes/images/GENE10_E002_gr.pdf vignettes/images/ZNF410_E013_gr.pdf
vignettes/images/aspliInteraction.png
vignettes/images/binDefinition.gtf
vignettes/images/binDefinition.pdf
vignettes/images/binDefinition.svg
vignettes/images/clusters_ok.pdf vignettes/images/event_assignment.pdf
vignettes/images/event_assignment.svg
vignettes/images/fig1.pdf
vignettes/images/fig1.png
vignettes/images/fig1.svg
vignettes/images/fig1A.png
vignettes/images/fig2.png
vignettes/images/integrateSignals.png
vignettes/images/outputFolder.png
vignettes/images/pir.pdf vignettes/images/pir_junc.pdf vignettes/images/psi3ss.pdf vignettes/images/psi5ss.pdf vignettes/images/psi_junc.pdf
vignettes/images/psi_pir.svg
vignettes/images/psi_pir2.pdf
vignettes/images/psi_pir2.svg
vignettes/images/psi_pir_junc.pdf
vignettes/images/psi_pir_junc.svg
vignettes/images/psi_pir_junc_ok.pdf vignettes/images/psies.pdf
vignettes/images/syntHTML.png
vignettes/images/wf.svg
vignettes/images/workflow.pdf
vignettes/images/workflow.svg
vignettes/images/workflow_ok.pdf
vignettes/pir.png
vignettes/psi_altSS.png
vignettes/psi_es.png
vignettes/venn.png
vignettes/wf.png
chernolab/ASpli documentation built on March 11, 2021, 12:24 a.m.