filterSignals: Filter signals

In chernolab/ASpli: Analysis of Alternative Splicing Using RNA-Seq

Description

Filter signals

Usage

    filterSignals( sr,
                   bin.FC = 3,
                   bin.fdr = 0.05,
                   nonunif = 1,
                   bin.inclussion = 0.1,
                   bjs.inclussion = 0.2,
                   bjs.fdr = 0.1,
                   a.inclussion = 0.3,
                   a.fdr = 0.05,
                   l.inclussion = 0.3,
                   l.fdr = 0.05, 
                   bDetectionSummary = FALSE)

Arguments

sr	An object of class ASpliSplicingReport
bin.FC	Description TODO
bin.fdr	Description TODO
nonunif	Description TODO
bin.inclussion	Description TODO
bjs.inclussion	Description TODO
bjs.fdr	Description TODO
a.inclussion	Description TODO
a.fdr	Description TODO
l.inclussion	Description TODO
l.fdr	Description TODO
bDetectionSummary	Description TODO

Value

TODO

Author(s)

Estefania Mancini, Andres Rabinovich, Javier Iserte, Marcelo Yanovsky, Ariel Chernomoretz

See Also

ASpliSplicingReport

Examples

  # Create a transcript DB from gff/gtf annotation file.
  # Warnings in this examples can be ignored.
  
  #as <- new("ASpliAS")
  #targets <- 1
  #a <- junctionDUreportExt(as, targets)
  

chernolab/ASpli documentation built on March 11, 2021, 12:24 a.m.