ASpliAS-class: Class '"ASpliAS"'

Description Slots Author(s) See Also

Description

Results of PSI and PIR using experimental junctions

Slots

irPIR:

Reports: event, e1i counts (J1), ie1 counts (J2), j_within (J3), PIR by condition. J1, J2, J3 sum of junctions (J1, J2, J3) by condition.

altPSI:

Reports: event, J1 (start), J2 (end), J3 (exclusion), PSI. J1, J2, J3 sum of junctions (J1, J2, J3) by condition.

esPSI:

Reports: event, J1 (start), J2 (end), J3 (exclusion), PSI. J1, J2, J3 sum of junctions (J1, J2, J3) by condition.

join:

It is a combination of irPIR, altPSI and esPSI tables

junctionsPIR:

PIR metric for each experimental junction using e1i and ie2 counts. Exclusion junction is the junction itself. This output helps to discover new introns as well as new retention events

junctionsPJU:

Given a junction, it is possible to analyze if it shares start, end or both with another junction. If so, is because there is more than one way for/of splicing. Ratio between them along samples is reported.

targets:

DataFrame with targets.

.ASpliVersion:

ASpli version when this object was created. It should not be modified by the user.

Author(s)

Estefania Mancini, Andres Rabinovich, Javier Iserte, Marcelo Yanovsky, Ariel Chernomoretz

See Also

Methods: AsDiscover

Accesors: altPSI, irPIR, esPSI, joint, junctionsPIR, junctionsPJU


chernolab/ASpli documentation built on March 11, 2021, 12:24 a.m.