ASpli-deprecated: Deprecated functions in package 'ASpli'
In chernolab/ASpli: Analysis of Alternative Splicing Using RNA-Seq
Description
These functions are provided for compatibility with older versions
of ‘ASpli’ only, and will be defunct at the next release.
Details
The following functions are deprecated and will be made defunct; use
the replacement indicated below:
loadBAM: gbCounts
readCounts: gbCounts
AsDiscover: jCounts,
splicingReport,
integrateSignals
DUreport: gbDUreport,
jDUreport
DUreportBinSplice: gbDUreport
junctionDUreport: jDUreport
mergeBinDUAS: splicingReport,
integrateSignals
junctionsPSI: junctionsPJU
plotGenomicRegions: exportSplicingReports, exportIntegratedSignals
chernolab/ASpli documentation built on March 11, 2021, 12:24 a.m.
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Description
These functions are provided for compatibility with older versions of ‘ASpli’ only, and will be defunct at the next release.
Details
The following functions are deprecated and will be made defunct; use the replacement indicated below:
loadBAM:
gbCountsreadCounts:
gbCountsAsDiscover:
jCounts, splicingReport, integrateSignalsDUreport:
gbDUreport, jDUreportDUreportBinSplice:
gbDUreportjunctionDUreport:
jDUreportmergeBinDUAS:
splicingReport, integrateSignalsjunctionsPSI:
junctionsPJUplotGenomicRegions:
exportSplicingReports, exportIntegratedSignals
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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