fnet: Frequency network

In chongma1989/tiltmod: Exponential Tilting Method for Reproducible Screening of Large Scale Testing Problem

Description

This function displays the frequency network of discovered differentially expressed genes.

Usage

fnet(x, Simplify = FALSE, threshold = 0.05, max.ew = 3, max.size = 24,
  node = TRUE, directed = FALSE, print.graph = TRUE, ...)

Arguments

x	A list of discovered differentially expressed genes
Simplify	Logical indicating whether to discard the genes with lower relative freqency than the threshold. Default is FALSE.
threshold	A numeric value determining the cutoff point, where the genes are discarded with lower relative frequency than it. Default is 0.05.
max.ew	A numeric value. The maximum edge width in the network plot.
max.size	A numeric value, displays the maximum node size.
node	A logical value, illustrates the feature name in a circle. Default is TRUE.
directed	A logical value, indicates whether the edges are shown in directions. Default is FALSE.
print.graph	A logical value. Default is TRUE. If FALSE, then do not print the frequency network.
...	Arguments to be passed to plot.igraph.

Value

A network plot.

Examples

x=list(c(1,3,4),c(2,4,5),c(3,5,1),c(4,1,2),c(5,2,3))
## Not run: 
require(igraph)
fnet(x)
fnet(x,layout=layout.fruchterman.reingold,vertex.color="grey60")

## End(Not run)

chongma1989/tiltmod documentation built on May 7, 2019, 8:38 a.m.