writeAlts: writeAlts

In chrisamiller/copyCat: Find regions of genomic copy number loss and gain from short reads

Description

write out a tab-delimited table of CN alterations to the file "output/alts.dat"

Usage

  writeAlts(segs, rdo, filename="alts.dat")

Arguments

segs	a data frame that is the result of calling rd.cnSegments
rdo	a readDepth object created with new("rdObject")
filename	the filename to which the output will be written

Examples

  ##get regions of CN gain and loss
  #  segs <- rd.cnSegments(x)

  ##write out the table
  #  writeAlts(segs, rdo)

chrisamiller/copyCat documentation built on July 20, 2021, 12:59 a.m.