writeSegs: writeSegs

In chrisamiller/copyCat: Find regions of genomic copy number loss and gain from short reads

Description

write out a tab-delimited table of CN segments the file "output/segs.dat"

Usage

  writeSegs(segs, rdo, filename="segs.dat")

Arguments

segs	a data frame that is the result of calling rd.cnSegments
rdo	read depth object
filename	the filename to which the output will be written

Examples

  ##get regions of CN gain and loss
  #  segs <- rd.cnSegments(x)

  ##write out the table
  #  writeSegs(segs)

chrisamiller/copyCat documentation built on July 20, 2021, 12:59 a.m.