Man pages for christensensm/COMPOSE
Calculation and Visualization of Phenotypic CRISPR Screens
| calc.DESeq2.L2FC | Fold-change calculation for CRISPR screen |
| calc.seq.depth | Sequencing depth |
| conduct | Conduct: Single-function processing of CRISPR screen data |
| count.pca | PCA and Pearson correlation plots from counts table |
| count.violin | Count Distribution |
| essential.genes | Genes determined to be essential for cell fitness by Hart T... |
| extract.genefromguide | Extraction of gene names |
| fgsea.enrich | FGSEA utility |
| filterCounts | Filtration of gRNAs with Low Counts |
| gage.enrich | gage Geneset Enrichment Test |
| guides2genes | CRISPR Screen Scoring |
| id.convert | ID converter |
| L2FC.violin | Log2 Fold-Change Distribution |
| neg.controls | Names of negative controls for CRISPR screens using the... |
| plot_sigguides | Bidirectional barplot for sgRNA fold-change results |
| plot_upset | Upset plot for gene score results |
| plot_volcano | Volcano plot for sgRNA fold-change results |
| reactomepa.enrich | Reactome pathway analysis |
