id.convert: ID converter

In christensensm/COMPOSE: Calculation and Visualization of Phenotypic CRISPR Screens

Description

This function will take CSS with gene ids as rownames and convert them to a user-defined different ID using a user-given Annotation database

Usage

id.convert(
  CSS,
  genome.db = Org.Hs.eg.db,
  gene.ids = "ENTREZID",
  keytype = "SYMBOL"
)

Arguments

CSS	output CRISPR screen score matrix from create.CSS()
genome.db	genome database from which to convert gene symbols to other ids
gene.ids	type of gene ids in the geneset

Value

object with converted rownames to the desired gene IDs

See Also

mapIds

Examples

data(CSS.data)
library(org.Hs.eg.db)
CSS.newids <- id.convert(CSS.data, genome.db = genome.db, gene.ids = gene.ids)
...

christensensm/COMPOSE documentation built on Dec. 22, 2020, 3:43 a.m.