plot_volcano: Volcano plot for sgRNA fold-change results
In christensensm/COMPOSE: Calculation and Visualization of Phenotypic CRISPR Screens
Description
Usage
Arguments
See Also
Examples
Description
Visualization of fold-changes and p-values for sgRNAs
Usage
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plot_volcano(
results,
print = T,
save = F,
sig.cutoff = 0.05,
contrast = NULL,
top = NULL
)
Arguments
results
a calc.DESeq2.L2FC object
print
logical - do you want to print the plot to plots
save
logical - do you want to save the plot to pdf
sig.cutoff
adjusted p-value cutoff for sgRNA fold-changes
top
numerical - number of top guides to label (by p-value)
See Also
ggplot, ggrepel which this function uses to plot
Examples
1
christensensm/COMPOSE documentation built on Dec. 22, 2020, 3:43 a.m.
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Description Usage Arguments See Also Examples
Description
Visualization of fold-changes and p-values for sgRNAs
Usage
1 2 3 4 5 6 7 8 | plot_volcano(
results,
print = T,
save = F,
sig.cutoff = 0.05,
contrast = NULL,
top = NULL
)
|
Arguments
results |
a calc.DESeq2.L2FC object |
print |
logical - do you want to print the plot to plots |
save |
logical - do you want to save the plot to pdf |
sig.cutoff |
adjusted p-value cutoff for sgRNA fold-changes |
top |
numerical - number of top guides to label (by p-value) |
See Also
ggplot, ggrepel which this function uses to plot
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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