R/StarBioTrek.r

In claudiacava/StarBioTrek: StarBioTrek

#' Download data
#'
#' StarBioTrek allows you to Download data of samples from StarBioTrek
#'
#' The functions you're likely to need from \pkg{StarBioTrek} is
#' \code{path_star}
#'Otherwise refer to the vignettes to see
#' how to format the documentation.
#'
#' @docType package
#' @name StarBioTrek
NULL

#' Pathway data from KEGG
#' @docType data
#' @keywords internal
#' @name path
#' @format A data frame with rows and  variables
NULL

#' network data
#' @docType data
#' @keywords internal
#' @name netw
#' @format A data frame with  rows and variables
NULL




#' TCGA data
#' @docType data
#' @keywords internal
#' @name Data_CANCER_normUQ_filt
#' @format A data frame with rows and variables
NULL

#' Score Matrix of pairwise pathway using euclidean distance
#' @docType data
#' @keywords internal
#' @name score_euc_dist
#' @format A data frame with rows and variables
NULL

#' TCGA data with normal samples
#' @docType data
#' @keywords internal
#' @name norm
#' @format A data frame with rows and variables
NULL

#' TCGA data with tumour samples
#' @docType data
#' @keywords internal
#' @name tumo
#' @format A data frame with rows and variables
NULL

#' A matrix of gene expression for pathways given by the user. 
#' @docType data
#' @keywords internal
#' @name list_path_plot
#' @format A data frame with rows and variables
NULL