PlotMCMC: Plot MCMC

In cmlegault/ASAPplots: Creates Standard Plots and PDFs for ASAP3

Description

Makes a number of diagnostic plots to evaluate convergence in the Monte Carlo Markov Chain results.

Usage

PlotMCMC(
  wd,
  asap.name,
  asap,
  mcmc.burn = 0,
  mcmc.thin = 1,
  save.plots,
  od,
  plotf
)

Arguments

wd	directory where ASAP run is located
asap.name	Base name of original dat file (without the .dat extension)
asap	name of the variable that read in the asap.rdat file
mcmc.burn	number of realizations to remove from start of MCMC (defaults to 0)
mcmc.thin	thinning parameter for MCMC (defaults to 1)
save.plots	save individual plots
od	output directory for plots and csv files
plotf	type of plot to save

cmlegault/ASAPplots documentation built on March 29, 2021, 8:28 p.m.