Files in cmlegault/ASAPplots
Creates Standard Plots and PDFs for ASAP3
DESCRIPTION
LICENSE.txt
NAMESPACE
R/Sinclair_Z_functions.r
R/calc_freq_mean_se.r
R/convert_survey_to_at_age.r
R/create_default_docxASAP_control_file.r
R/create_param_list.R
R/docx_ASAP.r
R/get_fixed_params.R
R/grab_aux_files.r
R/grab_dat_file_index_sel_options.r
R/grab_names.r
R/helper_functions_for_catch_curve.r
R/helper_functions_for_reference_points.r
R/jitter_asap.R
R/make_selectivity_decoder.r
R/plot_ASAP.r
R/plot_CV.r
R/plot_M.r
R/plot_NAA.r
R/plot_RMSE_95CI.r
R/plot_RMSE_table.r
R/plot_SARC_Recr_SSB.r
R/plot_SPR_table.r
R/plot_SR_pred_line.r
R/plot_SSB_F_trends.r
R/plot_SSB_at_age.r
R/plot_all_biomass_types.r
R/plot_annual_MSY.r
R/plot_annual_SPR_targets.r
R/plot_catch_4_panel.r
R/plot_catch_age_comp.r
R/plot_catch_age_comp_bubbles.r
R/plot_catch_age_comp_resids.r
R/plot_catch_at_age_consistency.r
R/plot_catch_by_fleet.r
R/plot_catch_curves_for_catch.r
R/plot_catch_curves_for_indices.r
R/plot_catchability.r
R/plot_coh.r
R/plot_discard_4_panel.r
R/plot_expected_spawn.r
R/plot_fleet_Fmult.r
R/plot_fleet_Neff.r
R/plot_fleet_sel_blocks.r
R/plot_francis_fleet.r
R/plot_francis_index.r
R/plot_front_page.r
R/plot_high_CVs.r
R/plot_high_corr.r
R/plot_index_Neff.r
R/plot_index_age_comp_bubbles.r
R/plot_index_age_comp_resids.r
R/plot_index_at_age_consistency.r
R/plot_index_input.r
R/plot_index_selectivities.r
R/plot_indices_4_panel.r
R/plot_jitter.R
R/plot_main_likelihoods.r
R/plot_maturity.r
R/plot_mcmc.r
R/plot_recr_ssb_yr.r
R/plot_recruitment_devs.r
R/plot_waa_matrices.r
R/plot_yield_curves.r
R/read_ASAP3_dat_file.R
R/read_ASAP3_pin_file.R
R/retrospective_functions.r
R/run_jitter.R
R/summarize_ASAP.r
R/write_ASAP3_dat_file.R
R/write_ASAP3_pin_file.R
README.md
man/CalcFreqMeanSE.Rd
man/ConvertSurveyToAtAge.Rd
man/CreateParamList.Rd
man/GetFixedParams.Rd
man/GrabAuxFiles.Rd
man/GrabDatFileIndexSelOptions.Rd
man/GrabNames.Rd
man/JitterASAP.Rd
man/MakeSelectivityDecoder.Rd
man/PlotASAP.Rd
man/PlotAllBiomassTypes.Rd
man/PlotAnnualMSY.Rd
man/PlotAnnualSPRtargets.Rd
man/PlotCV.Rd
man/PlotCatch4Panel.Rd
man/PlotCatchAgeComp.Rd
man/PlotCatchAgeCompBubbles.Rd
man/PlotCatchAgeCompResids.Rd
man/PlotCatchAtAgeConsistency.Rd
man/PlotCatchByFleet.Rd
man/PlotCatchCurvesForCatch.Rd
man/PlotCatchCurvesForIndices.Rd
man/PlotCatchability.Rd
man/PlotCoh.Rd
man/PlotDiscard4Panel.Rd
man/PlotExpSpawn.Rd
man/PlotFleetFmult.Rd
man/PlotFleetNeff.Rd
man/PlotFleetSelBlocks.Rd
man/PlotFrancisFleet.Rd
man/PlotFrancisIndex.Rd
man/PlotFrontPage.Rd
man/PlotHighCVs.Rd
man/PlotHighCorr.Rd
man/PlotIndexAgeCompBubbles.Rd
man/PlotIndexAgeCompResids.Rd
man/PlotIndexAtAgeConsistency.Rd
man/PlotIndexInput.Rd
man/PlotIndexNeff.Rd
man/PlotIndexSelectivities.Rd
man/PlotIndices4Panel.Rd
man/PlotJitter.Rd
man/PlotM.Rd
man/PlotMCMC.Rd
man/PlotMainLikelihoods.Rd
man/PlotMaturity.Rd
man/PlotNAA.Rd
man/PlotRMSE95CI.Rd
man/PlotRMSEtable.Rd
man/PlotRecrSSByr.Rd
man/PlotRecruitmentDevs.Rd
man/PlotRetroWrapper.Rd
man/PlotSARCrecSSB.Rd
man/PlotSPRtable.Rd
man/PlotSRpredLine.Rd
man/PlotSSBFtrend.Rd
man/PlotSSBatAge.Rd
man/PlotWAAmatrices.Rd
man/PlotYieldCurves.Rd
man/ReadASAP3DatFile.Rd
man/ReadASAP3PinFile.Rd
man/RunJitter.Rd
man/SummarizeASAP.Rd
man/WriteASAP3DatFile.Rd
man/WriteASAP3PinFile.Rd
man/createDefaultdocxASAPcontrolfile.Rd
man/docxASAP.Rd
man/get_Sinclair_Z.Rd
pdf/Technical_Documentation_for_ASAP3.pdf
pdf/User_Manual_for_ASAP3.pdf
vignettes/docx-vignette.Rmd
vignettes/jitter-vignette.Rmd
