plot_mito_umi_per_cell: Plot a histogram of the percentage of UMIs mapping to...
In cole-trapnell-lab/monocle3: Clustering, Differential Expression, and Trajectory Analysis for Single-Cell RNA-Seq
plot_mito_umi_per_cell R Documentation
Plot a histogram of the percentage of UMIs mapping to mitochondria for each cell.
Description
Plot a histogram of the percentage of UMIs mapping to mitochondria for each cell.
Usage
plot_mito_umi_per_cell(cds, max_mito_pct = .max_mito_pct, pseudocount = 0.001)
Arguments
cds
A cell_data_set for plotting.
max_mito_pct
Cutoff for the maximum percentage of UMIs mapping to mitochondria.
pseudocount
Value to add to the percentages before taking the log. Note that this is in terms of percent, not fractional.
Value
A ggplot2 object.
cole-trapnell-lab/monocle3 documentation built on June 11, 2025, 11:22 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| plot_mito_umi_per_cell | R Documentation |
Plot a histogram of the percentage of UMIs mapping to mitochondria for each cell.
Description
Plot a histogram of the percentage of UMIs mapping to mitochondria for each cell.
Usage
plot_mito_umi_per_cell(cds, max_mito_pct = .max_mito_pct, pseudocount = 0.001)
Arguments
cds |
A cell_data_set for plotting. |
max_mito_pct |
Cutoff for the maximum percentage of UMIs mapping to mitochondria. |
pseudocount |
Value to add to the percentages before taking the log. Note that this is in terms of percent, not fractional. |
Value
A ggplot2 object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.