View source: R/glog_transformation.R
glog_plot_optimised_lambda | R Documentation |
Plot SSE error of lambda optimisation process
glog_plot_optimised_lambda( df, optimised_lambda, classes, qc_label, plot_grid = 100 )
df |
A matrix-like (e.g. an ordinary matrix, a data frame) or
RangedSummarizedExperiment-class object with
all values of class |
optimised_lambda |
|
classes |
|
qc_label |
|
plot_grid |
|
Class ggplot
object containing optimisation plot.
data <- MTBLS79[, MTBLS79$Batch == 1] classes <- data$Class data <- mv_imputation(df=data, method='knn') out <- glog_transformation (df=data, classes=classes, qc_label='QC') optimised_lambda <- S4Vectors::metadata(out) optimised_lambda <- optimised_lambda$processing_history$glog_transformation$lambda_opt glog_plot_optimised_lambda(df=data, classes=classes, qc_label="QC", optimised_lambda=optimised_lambda)
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