sbc_plot | R Documentation |
Plot the output from signal batch correction for the selected or the first 100 features.
sbc_plot( df, corrected_df, classes, batch, indexes = NULL, qc_label = "QC", output = "sbcms_plots.pdf" )
df |
A matrix-like (e.g. an ordinary matrix, a data frame) or
RangedSummarizedExperiment-class object with
all values of class |
corrected_df |
Output from QCRSC function. |
classes |
|
batch |
|
indexes |
|
qc_label |
|
output |
|
Pdf file or list()
object ggplot
class showing data
before and after signal correction.
order <- c(1:ncol(MTBLS79)) data <- MTBLS79[1:10, ] out <- QCRSC(df =data, order=order, batch=MTBLS79$Batch, classes=MTBLS79$Class, spar=0, minQC=4) plots <- sbc_plot (df=data, corrected_df=out, classes=MTBLS79$Class, batch=MTBLS79$Batch, output=NULL)
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