DatasetExperiment_boxplot: Feature distribution histogram

In computational-metabolomics/structToolbox: Data processing & analysis tools for Metabolomics and other omics

Feature distribution histogram

Description

A boxplot to visualise the distribution of values within a subset of features.

Usage

DatasetExperiment_boxplot(
  factor_name,
  by_sample = TRUE,
  per_class = TRUE,
  number = 50,
  ...
)

Arguments

factor_name	(character) The name of a sample-meta column to use.
by_sample	(logical) Plot by sample. Allowed values are limited to the following: "TRUE": The data is plotted across features for a subset of samples. "FALSE": The data is plotted across samples for a subset of features. The default is TRUE.
per_class	(logical) Plot per class. Allowed values are limited to the following: "TRUE": The data is plotted for each class. "FALSE": The data is plotted for all samples. The default is TRUE.
number	(numeric, integer) The number of features/samples plotted. The default is 50.
...	Additional slots and values passed to struct_class.

Value

A DatasetExperiment_boxplot object. This object has no output slots. See chart_plot in the struct package to plot this chart object.

struct object

Inheritance

A DatasetExperiment_boxplot object inherits the following struct classes:

⁠[DatasetExperiment_boxplot]⁠ >> ⁠[chart]⁠ >> ⁠[struct_class]⁠

Examples

M = DatasetExperiment_boxplot(
      factor_name = "V1",
      by_sample = FALSE,
      per_class = FALSE,
      number = 50)

D = MTBLS79_DatasetExperiment()
C = DatasetExperiment_boxplot(factor_name='Class',number=10,per_class=FALSE)
chart_plot(C,D)

computational-metabolomics/structToolbox documentation built on July 5, 2024, 12:18 p.m.