feature_boxplot: Feature boxplot

In computational-metabolomics/structToolbox: Data processing & analysis tools for Metabolomics and other omics

Feature boxplot

Description

A boxplot to visualise the distribution of values within a feature.

Usage

feature_boxplot(
  label_outliers = TRUE,
  feature_to_plot,
  factor_name,
  show_counts = TRUE,
  style = "boxplot",
  jitter = FALSE,
  fill = FALSE,
  ...
)

Arguments

label_outliers	(logical) Label outliers. Allowed values are limited to the following: "TRUE": The index for outlier samples is included on the plot. "FALSE": No labels are displayed. The default is TRUE.
feature_to_plot	(character, numeric, integer) The column name of the plotted feature.
factor_name	(character) The name of a sample-meta column to use.
show_counts	(logical) Show counts. Allowed values are limited to the following: "TRUE": The number of samples for each box is displayed. "FALSE": The number of samples for each box is not displayed. The default is TRUE.
style	(character) Plot style. Allowed values are limited to the following: "boxplot": Boxplot style. "violin": Violon plot style. The default is "boxplot".
jitter	(logical) Include points plotted with added jitter. The default is FALSE.
fill	(logical) Block fill the boxes or violins with the group colour. The default is FALSE.
...	Additional slots and values passed to struct_class.

Value

A feature_boxplot object. This object has no output slots. See chart_plot in the struct package to plot this chart object.

Inheritance

A feature_boxplot object inherits the following struct classes:

⁠[feature_boxplot]⁠ >> ⁠[chart]⁠ >> ⁠[struct_class]⁠

Examples

M = feature_boxplot(
      label_outliers = FALSE,
      feature_to_plot = "V1",
      factor_name = "V1",
      show_counts = FALSE,
      style = "boxplot",
      jitter = FALSE,
      fill = FALSE)

D = MTBLS79_DatasetExperiment
C = feature_boxplot(factor_name='Species',feature_to_plot='Petal.Width')
chart_plot(C,D)

computational-metabolomics/structToolbox documentation built on July 5, 2024, 12:18 p.m.