coregenomics/kmap: Generate mappable regions of the genome for a given K-mer length

Knowing where reads can uniquely map in the genome is useful for nascent RNA assays, both in statistical calculations and to make predictions. kmap takes two inputs: a genome and the read length, K. The output is automatically cached on disk.

Getting started

Package details

AuthorDeivydas Giedrimas, Pariksheet Nanda
MaintainerDeivydas Giedrimas <[email protected]>
LicenseGPL-3
Version0.1.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("coregenomics/kmap")
coregenomics/kmap documentation built on June 12, 2018, 1:20 a.m.