README.md

In coregenomics/kmap: Generate mappable regions of the genome for a given K-mer length

kmap

Generate mappable regions of the genome for a given K-mer length.

Knowing where reads can uniquely map in the genome is useful for nascent RNA assays, both in statistical calculations and to make predictions. kmap takes two inputs: a genome and the read length, K. The output is automatically cached on disk.

library(kmap)

gr <- mappable("hg38", kmer = 36)

Usage

Install the latest version of kmer using:

BiocManager::install("coregenomics/kmap")

If the above command fails, install Bioconductor.

install.packages("BiocManager")

coregenomics/kmap documentation built on June 4, 2019, 4:11 p.m.