stddna: Subset to standard DNA bases
In coregenomics/kmap: Generate mappable regions of the genome for a given K-mer length
Description
Usage
Arguments
Value
Description
Functions for subsetting to standard DNA for a BSgenome (or BSgenomeViews).
Usage
1
2
3
stddna_from_genome(bsgenome, BPPARAM = bpparam())
stddna_from_views(views, BPPARAM = bpparam())
Arguments
bsgenome
The BSgenome DNA to subset.
BPPARAM
An optional BiocParallelParam
instance determining the parallel back-end to be used during evaluation,
or a list of
BiocParallelParam instances, to be applied in
sequence for nested calls to BiocParallel functions.
views
The BSgenomeViews DNA to subset.
Value
A BSgenomeViews object with non-standard DNA bases (i.e. bases
not in DNA_BASES) removed for
stddna_from_genome, and a GRanges object for
stddna_from_views.
coregenomics/kmap documentation built on June 4, 2019, 4:11 p.m.
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Description Usage Arguments Value
Description
Functions for subsetting to standard DNA for a BSgenome (or BSgenomeViews).
Usage
1 2 3 | stddna_from_genome(bsgenome, BPPARAM = bpparam())
stddna_from_views(views, BPPARAM = bpparam())
|
Arguments
bsgenome |
The |
BPPARAM |
An optional |
views |
The |
Value
A BSgenomeViews object with non-standard DNA bases (i.e. bases
not in DNA_BASES) removed for
stddna_from_genome, and a GRanges object for
stddna_from_views.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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