align: Return GRanges of uniquely mapping hits.

Description Usage Arguments Value

Description

Return GRanges of uniquely mapping hits.

Usage

1
align(views, genome = NULL, BPPARAM = bpparam(), ...)

Arguments

views

The BSgenomeViews DNA to be mapped.

genome

The BSgenome DNA to search for hits.

BPPARAM

An optional BiocParallelParam instance determining the parallel back-end to be used during evaluation, or a list of BiocParallelParam instances, to be applied in sequence for nested calls to BiocParallel functions.

...

Extra arguments passed on to qAlign.

Value

The GRanges-class of uniquely mapping DNA sequences.


coregenomics/kmap documentation built on June 4, 2019, 4:11 p.m.