Man pages for cozygene/bisque
Decomposition of Bulk Expression with Single-Cell Sequencing
| CalculateSCCellProportions | Calculate cell proportions based on single-cell data |
| CorTri | Correlate columns of data frame |
| CountsToCPM | Convert counts data in Expression Set to counts per million... |
| EstimatePCACellTypeProportions | Estimate cell type proportions using first PC of expression... |
| FilterUnexpressedGenes | Remove genes in Expression Set with zero expression in all... |
| FilterZeroVarianceGenes | Remove genes in Expression Set with zero variance across... |
| GenerateSCReference | Generate reference profile for cell types identified in... |
| GetCTP | Return cell type proportions from bulk |
| GetNumGenes | Get number of genes to use with no weighted information |
| GetNumGenesWeighted | Get number of genes to use with weighted PCA |
| GetOverlappingGenes | Find overlapping genes in single-cell data, bulk data, and... |
| GetOverlappingSamples | Find overlapping samples in single-cell and bulk data |
| GetUniqueMarkers | Get unique markers present in only 1 cell type |
| MarkerBasedDecomposition | Performs marker-based decomposition of bulk expression using... |
| ReferenceBasedDecomposition | Performs reference-based decomposition of bulk expression... |
| SemisupervisedTransformBulk | Transforms bulk expression of a gene using only single-cell... |
| SeuratToExpressionSet | Converts Seurat object to Expression Set |
| SimulateBarcode | Simulate barcode for decomposition illustration |
| SimulateData | Simulate data for decomposition illustration |
| SupervisedTransformBulk | Transforms bulk expression of a gene given overlapping data |
