CalculateSCCellProportions: Calculate cell proportions based on single-cell data

In cozygene/bisque: Decomposition of Bulk Expression with Single-Cell Sequencing

Description

Returns proportion of each cell type out of total cells for each individual in the single-cell Expression Set

Usage

CalculateSCCellProportions(sc.eset, subject.names, cell.types)

Arguments

sc.eset	Expression Set with single-cell data
subject.names	A character string. Name of phenoData attribute in sc.eset that indicates individual ID.
cell.types	A character string. Name of phenoData attribute in sc.eset that indicates cell type

Value

sc.props Matrix. Cell proportions with number of cell types rows by number of individuals columns

cozygene/bisque documentation built on May 28, 2021, 7:57 p.m.