GetNumGenesWeighted: Get number of genes to use with weighted PCA

In cozygene/bisque: Decomposition of Bulk Expression with Single-Cell Sequencing

Description

Get number of genes to use with weighted PCA

Usage

GetNumGenesWeighted(x, w, min.gene = 25, max.gene = 200)

Arguments

x	Numeric Matrix. A sample by gene expression matrix containing the marker genes.
w	Numeric Vector. The weights of the genes that correspond to the columns of x.
min.gene	Numeric. Minimum number of genes to consider as markers.
max.gene	Numeric. Maximum number of genes to consider as markers.

Value

best.n Numeric. Number of genes to use

cozygene/bisque documentation built on May 28, 2021, 7:57 p.m.