GenerateSCReference: Generate reference profile for cell types identified in...
In cozygene/bisque: Decomposition of Bulk Expression with Single-Cell Sequencing
Description
Usage
Arguments
Value
View source: R/reference_based.R
Description
Averages expression within each cell type across all samples to use as
reference profile.
Usage
1
GenerateSCReference(sc.eset, cell.types)
Arguments
sc.eset
Expression Set with single-cell data
cell.types
A character string. Name of phenoData attribute in sc.eset
that indicates cell type
Value
sc.ref Matrix. Reference profile with number of gene rows by number
of cell types columns.
cozygene/bisque documentation built on May 28, 2021, 7:57 p.m.
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Description Usage Arguments Value
View source: R/reference_based.R
Description
Averages expression within each cell type across all samples to use as reference profile.
Usage
1 | GenerateSCReference(sc.eset, cell.types)
|
Arguments
sc.eset |
Expression Set with single-cell data |
cell.types |
A character string. Name of phenoData attribute in sc.eset that indicates cell type |
Value
sc.ref Matrix. Reference profile with number of gene rows by number of cell types columns.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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