Files in cpanse/NestLink
NestLink an R data package to guide through Engineered Peptide Barcodes for In-Depth Analyzes of Binding Protein Ensembles
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/compose.R
R/fasta.R
R/utilityFunctions_NGS.r
R/workflow_NGS.r
R/zzz.R
README.md
_config.yml
exec/fgcz_cut60.bash
exec/p1875_db11.bash
exec/p1875_db12.bash
exec/p1875_db7.bash
exec/p1875_db8.bash
exec/p3127_db1_20190503.fasta
inst/CITATION
inst/NEWS.Rd
inst/R/GS-7AA.R
inst/extdata/metadata.csv
inst/scripts/Dockerfile
inst/scripts/make-data.R
inst/scripts/make-metadata.R
inst/shiny/p1875_db10/server.R
inst/shiny/p1875_db10/ui.R
man/F255744.Rd
man/NB.unambiguous.Rd
man/NB.unique.Rd
man/PGexport.Rd
man/WU160118.Rd
man/compose_GPGx8cTerm.Rd
man/compose_GPx10R.Rd
man/compose_GSx7cTerm.Rd
man/dot-ssrc.mascot.Rd
man/getExperimentHubFilename.Rd
man/getFC.Rd
man/getNB.Rd
man/nanobodyFlycodeLinking.as.fasta.Rd
man/nanobodyFlycodeLinking.summary.Rd
man/plot_in_silico_LCMS_map.Rd
man/runNGSAnalysis.Rd
man/twoPatternReadFilter.Rd
tests/testthat.R
tests/testthat/test-compose.R
tests/testthat/test_ngs.R
vignettes/5_lfq.Rmd
vignettes/5_lfq_log2ratio.Rmd
vignettes/Figs/FigureS6b.csv
vignettes/Figs/NestLink_AAFreqPercent-1.png
vignettes/Figs/NestLink_FCAAfreqAbsolut-1.png
vignettes/Figs/NestLink_absolute_flycode_simulation-1.png
vignettes/Figs/NestLink_boxplot_techrep_biorep-1.png
vignettes/Figs/NestLink_relative_flycode_simulation-1.png
vignettes/Figs/NestLink_relative_flycode_simulation-2.png
vignettes/Figs/timeline_p1644.jpeg
vignettes/Figs/timeline_p1875.jpeg
vignettes/NestLink.bib
vignettes/SupplementaryNote1.Rmd
vignettes/cmpPredictedMeasuredFlycode.Rmd
vignettes/make-data.Rmd
vignettes/sequenceNanobodyFlycodeLinkage.Rmd
vignettes/simulateFlycodes.Rmd
vignettes/summaryFASTA.Rmd
