Man pages for cparsania/FungiExpresZ
FungiExpresZ: Fungal gene expression data analysis and visualizations

app_serverapp server
app_uiapp_ui
badge_custom_urlget custom badge url
badge_devel_urlget github repo version devel bedge
badge_github_release_urlcreate a custom badge url for github release
check_var_typesvalidate vars
cross_ref_go_dbCross reference GO_ID to GID mapping from GO.db data
decorate_ggplotDecorate GG plot
generate_random_stringsGenerates n random string of length 10
get_ca_gene_names_mappingMap Candida albicans genes between orf_XXXXX and C1_XXXXX
get_densityget_density
get_expression_mats_dir_pathGet absolute path for the expression matrix .rds files. It...
get_gg_colorsGet character vector of ggplot colors in default order
get_test_dataget random sample of gene expression matrix
lm_eqnlm_eqn
mod_add_gene_groupsadd_gene_groups_ui and add_gene_groups
mod_add_sample_groupadd_sample_group_ui and add_sample_group
mod_cluster_wise_sample_informationcluster_wise_sample_information_ui and...
mod_display_active_groupsdisplay_active_groups_ui and display_active_groups_server
mod_display_sra_sample_infodisplay_sra_sample_info_ui and display_sra_sample_info_server
mod_download_gene_expression_matrixmod_download_gene_expression_matrix_ui and...
mod_download_go_datadownload_go_data_ui and download_go_data_server
mod_export_base_graphicsexport_base_graphics_ui and export_base_graphics
mod_export_plotexport_plot_ui export_plot
mod_functional_analysisfunctional_analysis_ui and functional_analysis_server
mod_gene_group_selectiongene_group_selection_ui and gene_group_selection
mod_ggplot_fill_and_facetggplot_fill_and_facet_ui and ggplot_fill_and_facet
mod_ggplot_fill_colourggplot_fill_colour_ui and ggplot_fill_colour
mod_joy_plot_fill_and_facetjoy_plot_fill_and_facet_ui and joyplot_fill_and_facet
mod_plot_title_and_axis_labelplot_title_and_axis_label_ui and...
mod_word_cloudword_cloud_ui and word_cloud_server
my_filtercreate column filters
perform_go_enrichmetPerform GO enrichment using clusterProfiler
reorder_clustersreorder_clusters
run_appRun the Shiny Application
shinyInputcreate shiny inputs
text_to_clean_documentConvert text into clean document using several functions from...
text_to_tibbleGiven a string separated by specified deliminator, the...
tibble_to_row_clustersGiven a tibble of gene expression matrix, perform row wise...
tibble_to_rowwise_sd_zsgiven the tibble and column indices add columns of row wise...
cparsania/FungiExpresZ documentation built on June 15, 2020, 9:28 p.m.