Files in cparsania/FungiExpresZ
FungiExpresZ: Fungal gene expression data analysis and visualizations

.Rbuildignore
.Rprofile
.gitattributes
.gitignore
CODE_OF_CONDUCT.md
DESCRIPTION
Dockerfile
LICENSE
LICENSE.md
NAMESPACE
NEWS.md R/app_server.R R/app_ui.R
R/fe_utils.R
R/global.R R/golem_utils_server.R R/golem_utils_ui.R R/mod_add_gene_groups.R R/mod_add_sample_group.R R/mod_cluster_wise_sample_information.R R/mod_display_active_groups.R R/mod_display_sra_sample_info.R R/mod_download_gene_expression_matrix.R R/mod_download_go_data.R R/mod_export_base_graphics.R R/mod_export_plot.R R/mod_functional_analysis.R R/mod_gene_group_selection.R R/mod_ggplot_fill_and_facet.R R/mod_ggplot_fill_colour.R R/mod_joy_plot_fill_and_facet.R R/mod_plot_title_and_axis_label.R R/mod_word_cloud.R R/run_app.R
R/sysdata.rda
README.Rmd README.md
_Dockerfile
app.R
inst/app/cartoon_data/.gitignore
inst/app/cartoon_data/all_rna_seq_log2_fpkm_with_replicates.txt
inst/app/cartoon_data/ca_id_map_one_to_many.txt
inst/app/cartoon_data/cartoon_all_fpkm.txt
inst/app/cartoon_data/cartoon_gene_groups_by_treat1.txt
inst/app/cartoon_data/cartoon_gene_groups_by_treat1_treat2.txt
inst/app/cartoon_data/cartoon_gene_groups_by_treat1_treat3.txt
inst/app/cartoon_data/cartoon_gene_groups_by_treat2.txt
inst/app/cartoon_data/cartoon_gene_groups_by_treat2_treat3.txt
inst/app/cartoon_data/cartoon_gene_groups_by_treat3.txt
inst/app/cartoon_data/cartoon_log2_fc.txt
inst/app/cartoon_data/cartoon_log2fpkm_log2fc.txt
inst/app/cartoon_data/cartoon_repl_fpkm.txt
inst/app/cartoon_data/cartoon_repl_mean_fpkm.txt
inst/app/cartoon_data/cartoon_sample_groups_by_cond.txt
inst/app/expression_mats_rds_files_new/.gitignore
inst/app/expression_mats_rds_files_new/a_fumigatus_expr_mat.rds
inst/app/expression_mats_rds_files_new/a_nidulans_expr_mat.rds
inst/app/expression_mats_rds_files_new/a_niger_expr_mat.rds
inst/app/expression_mats_rds_files_new/c_albicans_expr_mat.rds
inst/app/expression_mats_rds_files_new/c_auris_expr_mat.rds
inst/app/expression_mats_rds_files_new/c_glabrata_expr_mat.rds
inst/app/expression_mats_rds_files_new/s_cerevisiae_expr_mat.rds
inst/app/expression_mats_rds_files_new/sample_info.rds
inst/app/expression_mats_rds_files_new/t_marneffei_expr_mat.rds
inst/app/www/android-chrome-192x192.png
inst/app/www/android-chrome-512x512.png
inst/app/www/apple-touch-icon.png
inst/app/www/docker_cpu_and_memory.png
inst/app/www/example_data_for_plotting.png
inst/app/www/example_data_gene_group_info.png
inst/app/www/example_data_group_info.png
inst/app/www/favicon-16x16.png
inst/app/www/favicon-32x32.png
inst/app/www/favicon.ico
inst/app/www/google_analytics.js
inst/app/www/hex_sticker.ai
inst/app/www/hex_sticker.png
inst/app/www/hex_sticker.svg
man/app_server.Rd man/app_ui.Rd man/badge_custom_url.Rd man/badge_devel_url.Rd man/badge_github_release_url.Rd man/check_var_types.Rd man/cross_ref_go_db.Rd man/decorate_ggplot.Rd man/generate_random_strings.Rd man/get_ca_gene_names_mapping.Rd man/get_density.Rd man/get_expression_mats_dir_path.Rd man/get_gg_colors.Rd man/get_test_data.Rd man/lm_eqn.Rd man/mod_add_gene_groups.Rd man/mod_add_sample_group.Rd man/mod_cluster_wise_sample_information.Rd man/mod_display_active_groups.Rd man/mod_display_sra_sample_info.Rd man/mod_download_gene_expression_matrix.Rd man/mod_download_go_data.Rd man/mod_export_base_graphics.Rd man/mod_export_plot.Rd man/mod_functional_analysis.Rd man/mod_gene_group_selection.Rd man/mod_ggplot_fill_and_facet.Rd man/mod_ggplot_fill_colour.Rd man/mod_joy_plot_fill_and_facet.Rd man/mod_plot_title_and_axis_label.Rd man/mod_word_cloud.Rd man/my_filter.Rd man/perform_go_enrichmet.Rd man/reorder_clusters.Rd man/run_app.Rd man/shinyInput.Rd man/text_to_clean_document.Rd man/text_to_tibble.Rd man/tibble_to_row_clusters.Rd man/tibble_to_rowwise_sd_zs.Rd
renv.lock
renv/.gitignore
renv/activate.R
renv/settings.dcf
requirement_bin.txt
rsconnect/shinyapps.io/cparsania/FungiExpresZ.dcf
rsconnect/shinyapps.io/cparsania/FungiExpresZ_pkg.dcf
vignettes/.gitignore
vignettes/About.Rmd
vignettes/About_files/example_plots/barplot_1.png
vignettes/About_files/example_plots/barplot_3.png
vignettes/About_files/example_plots/box_plot_1.png
vignettes/About_files/example_plots/box_plot_2.png
vignettes/About_files/example_plots/box_plot_3.png
vignettes/About_files/example_plots/box_plot_4.png
vignettes/About_files/example_plots/corr_heatbox_1.png
vignettes/About_files/example_plots/corr_heatbox_2.png
vignettes/About_files/example_plots/corr_heatbox_3.png
vignettes/About_files/example_plots/corr_heatbox_4.png
vignettes/About_files/example_plots/corr_heatbox_5.png
vignettes/About_files/example_plots/density_plot_1.png
vignettes/About_files/example_plots/density_plot_2.png
vignettes/About_files/example_plots/density_plot_3.png
vignettes/About_files/example_plots/density_plot_5.png
vignettes/About_files/example_plots/fungiexpresz.bib
vignettes/About_files/example_plots/go_barplot.png
vignettes/About_files/example_plots/go_cnetplot.png
vignettes/About_files/example_plots/go_dotplot.png
vignettes/About_files/example_plots/go_emapplot.png
vignettes/About_files/example_plots/go_heatplot.png
vignettes/About_files/example_plots/go_upsetplot.png
vignettes/About_files/example_plots/heatmap_1.png
vignettes/About_files/example_plots/heatmap_2.png
vignettes/About_files/example_plots/heatmap_3.png
vignettes/About_files/example_plots/heatmap_4.png
vignettes/About_files/example_plots/heatmap_5.png
vignettes/About_files/example_plots/heatmap_6.png
vignettes/About_files/example_plots/histogram_1.png
vignettes/About_files/example_plots/histogram_2.png
vignettes/About_files/example_plots/histogram_3.png
vignettes/About_files/example_plots/histogram_4.png
vignettes/About_files/example_plots/joy_plot_1.png
vignettes/About_files/example_plots/joy_plot_2.png
vignettes/About_files/example_plots/joy_plot_3.png
vignettes/About_files/example_plots/joy_plot_4.png
vignettes/About_files/example_plots/line_plot_1.png
vignettes/About_files/example_plots/line_plot_2.png
vignettes/About_files/example_plots/multi_scatter_plot.png
vignettes/About_files/example_plots/pca_plot_1.png
vignettes/About_files/example_plots/pca_plot_2.png
vignettes/About_files/example_plots/scatter_1.png
vignettes/About_files/example_plots/scatter_2.png
vignettes/About_files/example_plots/scatter_3.png
vignettes/About_files/example_plots/violin_plot_1.png
vignettes/About_files/example_plots/violin_plot_2.png
vignettes/About_files/example_plots/violin_plot_3.png
vignettes/About_files/example_plots/violin_plot_4.png
vignettes/About_files/fonts/open-sans-400.woff
vignettes/About_files/fonts/open-sans-700.woff
vignettes/About_files/images/body-bg.jpg
vignettes/About_files/images/body-bg.png
vignettes/About_files/images/header-bg.jpg
vignettes/About_files/images/highlight-bg.jpg
vignettes/About_files/style.css
vignettes/Citations.Rmd vignettes/FungiExpresZ.Rmd vignettes/Step_by_step_guide.Rmd vignettes/Tutorial.Rmd
vignettes/Tutorial_files/fonts/open-sans-400.woff
vignettes/Tutorial_files/fonts/open-sans-700.woff
vignettes/Tutorial_files/images/body-bg.jpg
vignettes/Tutorial_files/images/body-bg.png
vignettes/Tutorial_files/images/header-bg.jpg
vignettes/Tutorial_files/images/highlight-bg.jpg
vignettes/Tutorial_files/style.css
vignettes/fungiexpresz.bib
vignettes/newz_and_update.Rmd
vignettes/newz_and_update_files/fonts/open-sans-400.woff
vignettes/newz_and_update_files/fonts/open-sans-700.woff
vignettes/newz_and_update_files/images/body-bg.jpg
vignettes/newz_and_update_files/images/body-bg.png
vignettes/newz_and_update_files/images/header-bg.jpg
vignettes/newz_and_update_files/images/highlight-bg.jpg
vignettes/newz_and_update_files/style.css
vignettes/step_by_step_guide_files/screen_shots/01_fe_home.png
vignettes/step_by_step_guide_files/screen_shots/02_fe_barplot_inputs.png
vignettes/step_by_step_guide_files/screen_shots/02_fe_heatmap_inputs.png
vignettes/step_by_step_guide_files/screen_shots/02_fe_lineplot_inputs.png
vignettes/step_by_step_guide_files/screen_shots/02_fe_multi_scatter_to_violin_variable_selection.png
vignettes/step_by_step_guide_files/screen_shots/02_fe_scatter_plot_select_variables.png
vignettes/step_by_step_guide_files/screen_shots/02_fe_select_data.png
vignettes/step_by_step_guide_files/screen_shots/02_heatmap_inputs.pdf
vignettes/step_by_step_guide_files/screen_shots/02_heatmap_inputs.png
vignettes/step_by_step_guide_files/screen_shots/03_fe_file_upload.png
vignettes/step_by_step_guide_files/screen_shots/04_fe_sample_info.png
vignettes/step_by_step_guide_files/screen_shots/05_fe_sample_group.png
vignettes/step_by_step_guide_files/screen_shots/06_fe_gene_group.png
vignettes/step_by_step_guide_files/screen_shots/09_scatter_plot_advance_settings.png
vignettes/step_by_step_guide_files/screen_shots/10_common_theme_and_legend_settings.png
vignettes/step_by_step_guide_files/screen_shots/11_common_labels_and_title.png
vignettes/step_by_step_guide_files/screen_shots/12_multi_scatter_plot_advance_settings.png
vignettes/step_by_step_guide_files/screen_shots/13_corr_heat_box_advance_settings.png
vignettes/step_by_step_guide_files/screen_shots/14_density_plot_advance_settings.png
vignettes/step_by_step_guide_files/screen_shots/15_histogram_advance_settings.png
vignettes/step_by_step_guide_files/screen_shots/16_joy_plot_advance_settings.png
vignettes/step_by_step_guide_files/screen_shots/17_boxplot_advance_settings.png
vignettes/step_by_step_guide_files/screen_shots/18_violin_plot_advance_settings.png
vignettes/step_by_step_guide_files/screen_shots/19_barplot_advance_settings.png
vignettes/step_by_step_guide_files/screen_shots/20_pca_plot_advance_settings.png
vignettes/step_by_step_guide_files/screen_shots/21_line_plot_advance_settings.png
vignettes/step_by_step_guide_files/screen_shots/22_heat_map_row_options.png
vignettes/step_by_step_guide_files/screen_shots/23_heatmap_column_options.png
vignettes/step_by_step_guide_files/screen_shots/24_heatmap_legend_options.png
vignettes/step_by_step_guide_files/screen_shots/25_heatmap_fig_dim.png
vignettes/step_by_step_guide_files/screen_shots/26_download_plots.png
vignettes/step_by_step_guide_files/screen_shots/27_go_inputs.png
vignettes/step_by_step_guide_files/screen_shots/28_emap_plot_advance_settings.png
vignettes/step_by_step_guide_files/screen_shots/29_dot_and_bar_plot_advance_settings.png
vignettes/step_by_step_guide_files/screen_shots/30_cnet_plot_advance_Settings.png
vignettes/step_by_step_guide_files/screen_shots/31_upset_plot_advance_settings.png
vignettes/step_by_step_guide_files/screen_shots/33_go_heat_plot_advance_settings.png
vignettes/step_by_step_guide_files/screen_shots/34_fe_citations.png
vignettes/step_by_step_guide_files/screen_shots/35_fe_gene_expression_downloads.png
vignettes/step_by_step_guide_files/screen_shots/36_fe_go_data_downloads.png
vignettes/step_by_step_guide_files/screen_shots/37_fe_news_and_updates.png
vignettes/step_by_step_guide_files/screen_shots/38_fe_overview.png
vignettes/step_by_step_guide_files/screen_shots/39_fe_tutorials.png
vignettes/step_by_step_guide_files/screen_shots/heatmap_inputs.ai
cparsania/FungiExpresZ documentation built on June 15, 2020, 9:28 p.m.