Files in cparsania/FungiExpresZ
FungiExpresZ: Fungal gene expression data analysis and visualizations
.Rbuildignore
.Rprofile
.gitattributes
.gitignore
CODE_OF_CONDUCT.md
DESCRIPTION
Dockerfile
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/app_server.R
R/app_ui.R
R/fe_utils.R
R/global.R
R/golem_utils_server.R
R/golem_utils_ui.R
R/mod_add_gene_groups.R
R/mod_add_sample_group.R
R/mod_cluster_wise_sample_information.R
R/mod_display_active_groups.R
R/mod_display_sra_sample_info.R
R/mod_download_gene_expression_matrix.R
R/mod_download_go_data.R
R/mod_export_base_graphics.R
R/mod_export_plot.R
R/mod_functional_analysis.R
R/mod_gene_group_selection.R
R/mod_ggplot_fill_and_facet.R
R/mod_ggplot_fill_colour.R
R/mod_joy_plot_fill_and_facet.R
R/mod_pathway_analysis.R
R/mod_plot_title_and_axis_label.R
R/mod_word_cloud.R
R/prepare_fpkm_files_from_excel_data_functions.R
R/run_app.R
R/sysdata.rda
README.Rmd
README.md
_Dockerfile
app.R
docs/about.html
docs/step_by_step_guide.html
inst/app/cartoon_data/.gitignore
inst/app/cartoon_data/all_rna_seq_log2_fpkm_with_replicates.txt
inst/app/cartoon_data/ca_id_map_one_to_many.txt
inst/app/cartoon_data/cartoon_all_fpkm.txt
inst/app/cartoon_data/cartoon_gene_groups_by_treat1.txt
inst/app/cartoon_data/cartoon_gene_groups_by_treat1_treat2.txt
inst/app/cartoon_data/cartoon_gene_groups_by_treat1_treat3.txt
inst/app/cartoon_data/cartoon_gene_groups_by_treat2.txt
inst/app/cartoon_data/cartoon_gene_groups_by_treat2_treat3.txt
inst/app/cartoon_data/cartoon_gene_groups_by_treat3.txt
inst/app/cartoon_data/cartoon_log2_fc.txt
inst/app/cartoon_data/cartoon_log2fpkm_log2fc.txt
inst/app/cartoon_data/cartoon_repl_fpkm.txt
inst/app/cartoon_data/cartoon_repl_mean_fpkm.txt
inst/app/cartoon_data/cartoon_sample_groups_by_cond.txt
inst/app/expression_mats_rds_files_new/.gitignore
inst/app/expression_mats_rds_files_new/Aspergillus_carbonarius_ITEM_5010_expr_mat.rds
inst/app/expression_mats_rds_files_new/Aspergillus_flavus_expr_mat.rds
inst/app/expression_mats_rds_files_new/Aspergillus_glaucus_CBS_516.65_expr_mat.rds
inst/app/expression_mats_rds_files_new/Aspergillus_terreus_NIH2624_expr_mat.rds
inst/app/expression_mats_rds_files_new/Botrytis_cinerea_expr_mat.rds
inst/app/expression_mats_rds_files_new/Cryptococcus_neoformans_expr_mat.rds
inst/app/expression_mats_rds_files_new/Crytococcus_gattii_expr_mat.rds
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inst/app/expression_mats_rds_files_new/Fusarium_graminearum_expr_mat.rds
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inst/app/expression_mats_rds_files_new/Ustilago_maydis_expr_mat.rds
inst/app/expression_mats_rds_files_new/a_fumigatus_expr_mat.rds
inst/app/expression_mats_rds_files_new/a_nidulans_expr_mat.rds
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inst/app/expression_mats_rds_files_new/s_cerevisiae_expr_mat.rds
inst/app/expression_mats_rds_files_new/t_marneffei_expr_mat.rds
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rsconnect/rstudio-connect.icto.um.edu.mo/yb77630/fungiexpresz.dcf
rsconnect/rstudio-connect.icto.um.edu.mo/yb77630/fungiexpresz2.dcf
rsconnect/shinyapps.io/cparsania/FungiExpresZ.dcf
rsconnect/shinyapps.io/cparsania/FungiExpresZ_pkg.dcf
