dot-get_annotations_from_sradb: Prepare SRA sample annotations from SRAdb
In cparsania/FungiExpresZ: FungiExpresZ: Fungal gene expression data analysis and visualizations
.get_annotations_from_sradb R Documentation
Prepare SRA sample annotations from SRAdb
Description
It use three tables - 'sra', 'experiment' and 'sample' to get necessary information for an SRA id.
Usage
.get_annotations_from_sradb(sra_id, path_sra_db_sqlite_file)
Arguments
sra_id
a character vector denoting valid SRA id.
path_sra_db_sqlite_file
a character string denoting path to the 'SRAmetadb.sqlite' object.
Details
this is an internal function. It is called from the [FungiExpresZ::prepare_annotations_for_fungiexpres_data_mtrix()].
Value
a tibble.
cparsania/FungiExpresZ documentation built on March 15, 2024, 5:48 p.m.
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| .get_annotations_from_sradb | R Documentation |
Prepare SRA sample annotations from SRAdb
Description
It use three tables - 'sra', 'experiment' and 'sample' to get necessary information for an SRA id.
Usage
.get_annotations_from_sradb(sra_id, path_sra_db_sqlite_file)
Arguments
sra_id |
a character vector denoting valid SRA id. |
path_sra_db_sqlite_file |
a character string denoting path to the 'SRAmetadb.sqlite' object. |
Details
this is an internal function. It is called from the [FungiExpresZ::prepare_annotations_for_fungiexpres_data_mtrix()].
Value
a tibble.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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