qc_heatmap: Data Visualisation

In crickbabs/RNASeq-DESeq: DESeq2 Wrapper For Pre-Specified Analyses

Data Visualisation

Description

Generate visualisations of raw data

Usage

qc_heatmap(
  dds,
  pc_x = 1,
  pc_y = 2,
  family = "norm",
  title = "QC Visualisation",
  header = "\n\n##",
  param,
  caption = print
)

Arguments

dds	The DESeq2::DESeqDataSet object
pc_x	The default choice for which principal component to plot on the x axis
pc_y	The default choice for which principal component to plot on the y axis
family	Choice of PCA method
title	Data Visualisation
header	The markdown prefix that should precede any section
param	A parameter-set
caption	The function to use to create captions

Details

Plot heatmaps of the raw data, along with plots of the samples projected onto various slices of the PCA space.

Value

A list (invisible) of ggplot2 objects

Author(s)

Gavin Kelly

crickbabs/RNASeq-DESeq documentation built on Jan. 7, 2023, 11:23 p.m.