Files in crmclean/AutoTuner
Automated parameter selection for untargeted metabolomics data processing
..Rcheck/00install.out
..Rcheck/Autotuner-manual.tex
..Rcheck/Autotuner/DESCRIPTION
..Rcheck/Autotuner/INDEX
..Rcheck/Autotuner/LICENSE
..Rcheck/Autotuner/Meta/Rd.rds
..Rcheck/Autotuner/Meta/data.rds
..Rcheck/Autotuner/Meta/features.rds
..Rcheck/Autotuner/Meta/hsearch.rds
..Rcheck/Autotuner/Meta/links.rds
..Rcheck/Autotuner/Meta/nsInfo.rds
..Rcheck/Autotuner/Meta/package.rds
..Rcheck/Autotuner/NAMESPACE
..Rcheck/Autotuner/R/Autotuner
..Rcheck/Autotuner/R/Autotuner.rdb
..Rcheck/Autotuner/R/Autotuner.rdx
..Rcheck/Autotuner/application/app.R
..Rcheck/Autotuner/application/autotuner_parameters.csv
..Rcheck/Autotuner/data/Rdata.rdb
..Rcheck/Autotuner/data/Rdata.rds
..Rcheck/Autotuner/data/Rdata.rdx
..Rcheck/Autotuner/help/AnIndex
..Rcheck/Autotuner/help/Autotuner.rdb
..Rcheck/Autotuner/help/Autotuner.rdx
..Rcheck/Autotuner/help/aliases.rds
..Rcheck/Autotuner/help/paths.rds
..Rcheck/Autotuner/html/00Index.html
..Rcheck/Autotuner/html/R.css
..Rcheck/tests/startup.Rs
..Rcheck/tests/testthat.R
..Rcheck/tests/testthat.Rout
..Rcheck/tests/testthat/test_Autotuner.R
..Rcheck/tests/testthat/test_loadingData.R
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/Autotuner-class.R
R/EICParams.R
R/TIC_params.R
R/ThresholdingAlgo.R
R/checkBounds.R
R/checkEICFunctions.R
R/checkEICPeaks.R
R/data.R
R/dissectScans.R
R/extract_peaks.R
R/findPeakWidth.R
R/findTruePeaks.R
R/internal.R
R/isolatePeaks.R
R/peak_time_difference.R
R/peakwidth_est.R
R/peakwidth_table.R
R/plot_peaks.R
R/plot_signals.R
R/returnParams.R
README.md
data/eicParamsEsts.rda
data/mzDb.rda
data/observedPeak.rda
inst/extdata/Autotuner.rds
inst/extdata/AutotunerObj.rds
inst/extdata/eicParamsEsts.rds
inst/extdata/header.rds
inst/script/makeAutotunerTestData.R
inst/script/makeTestData.R
man/Autotuner-class.Rd
man/EICparams.Rd
man/TIC_params.Rd
man/ThresholdingAlgo.Rd
man/checkBounds.Rd
man/checkEICPeaks.Rd
man/createAutotuner.Rd
man/dissectScans.Rd
man/eicParamsEsts.Rd
man/estimatePPM.Rd
man/estimateSNThresh.Rd
man/extract_peaks.Rd
man/filterPeaksfromNoise.Rd
man/filterPpmError.Rd
man/findPeakWidth.Rd
man/findTruePeaks.Rd
man/getAutoFactorCol.Rd
man/getAutoFile_col.Rd
man/getAutoFile_paths.Rd
man/getAutoIntensity.Rd
man/getAutoMetadata.Rd
man/getAutoPeak_difference.Rd
man/getAutoPeak_table.Rd
man/getAutoPeaks.Rd
man/getAutoTime.Rd
man/initialize-Autotuner-method.Rd
man/isolatePeaks.Rd
man/mzDb.Rd
man/observedPeak.Rd
man/peak_time_difference.Rd
man/peakwidth_est.Rd
man/peakwidth_table.Rd
man/plot_peaks.Rd
man/plot_signals.Rd
man/returnParams.Rd
man/setAutoFactorCol.Rd
man/setAutoFile_col.Rd
man/setAutoFile_paths.Rd
man/setAutoIntensity.Rd
man/setAutoMetadata.Rd
man/setAutoPeak_difference.Rd
man/setAutoPeak_table.Rd
man/setAutoPeaks.Rd
man/setAutoTime.Rd
tests/testthat.R
tests/testthat/test_Autotuner.R
tests/testthat/test_gettersSetters.R
tests/testthat/test_loadingData.R
tests/testthat/test_paramSummary.R
vignettes/.gitignore
vignettes/Autotuner.Rmd
