Files in croesel/Trans2Kegg
Annotate transcripts and predicted protein sequences
.Rbuildignore
.gitignore
DESCRIPTION
Intercept.csv
Menthol_Menthol_vs_NoMenthol.csv
NAMESPACE
NEWS
R/annot.csv
R/annotateAws.R
R/annotateDE.R
R/blastResult.csv
R/deTrans.fa
R/getKegg.R
R/getPathway.R
R/localBLAST.R
R/mergeAnnotations.R
R/mergePaths.R
R/uniToKO.csv
Test.R
Trans2Kegg.R
Trans2Kegg.html
Trans2Kegg.sh
VibrioVibrio.MentholMenthol.csv
Vibrio_Vibrio_vs_NoVibrio.csv
annotateNCBI.R
blastResult.csv
build.err
build.sh
deTrans.fa
deWithPathsAndDetails.csv
dfAll.csv
dfRefs.csv
dfVibrio.csv
inst/extdata/Samples.csv
inst/extdata/aiptasia.fa
inst/extdata/annot.csv
inst/extdata/blastResult.csv
inst/extdata/blastToKO.csv
inst/extdata/catCounts.csv
inst/extdata/colData.csv
inst/extdata/countByClass.csv
inst/extdata/countByPath.csv
inst/extdata/cvCnt.csv
inst/extdata/cvCnt2.csv
inst/extdata/dePathsDetails.csv
inst/extdata/dfAll.csv
inst/extdata/dfDone.csv
inst/extdata/dfPathsKos2.csv
inst/extdata/dfRefs.csv
inst/extdata/path.csv
inst/extdata/pthKo.csv
inst/extdata/runtimes.csv
inst/extdata/tx2gene.csv
inst/extdata/uniToKO.csv
inst/script/GCA_001417965.1_Aiptasia_genome_1.1_genomic.fna.fai
inst/script/getTranscripts.sh
inst/unitTests/test_Trans2Kegg.R
man/annotateAWS.Rd
man/annotateDE.Rd
man/dot-blastSequencesToDataFrameAWS.Rd
man/dot-tryParseResultAws.Rd
man/getKegg.Rd
man/getPathDetails.Rd
man/getPathways.Rd
man/localBlast.Rd
man/mergeAnnotations.Rd
man/mergePaths.Rd
rox.R
testAws.R
testNCBI.R
tests/runTests.R
todo.md
uniToKO.csv
vignettes/Samples.csv
vignettes/Trans2Kegg.R
vignettes/Trans2Kegg.Rmd
vignettes/Trans2Kegg.html
vignettes/aiptasia.fa
vignettes/annot.csv
vignettes/bibliography.bib
vignettes/blastResult.csv
vignettes/blastToKO.csv
vignettes/catCounts.csv
vignettes/colData.csv
vignettes/countByClass.csv
vignettes/countByPath.csv
vignettes/cvCnt.csv
vignettes/dePathsDetails.csv
vignettes/dfAll.csv
vignettes/dfDone.csv
vignettes/dfPathsKos2.csv
vignettes/dfRefs.csv
vignettes/figures/BLAST_AMI.png
vignettes/figures/BLAST_AMI_SEARCH.png
vignettes/figures/EC2.png
vignettes/figures/enableHttp.png
vignettes/path.csv
vignettes/pthKo.csv
vignettes/runtimes.csv
vignettes/stangle.sh
vignettes/uniToKO.csv
