getPathways: Get KEGG pathway information for annotated transcripts
In croesel/Trans2Kegg: Annotate transcripts and predicted protein sequences
Description
Usage
Arguments
Value
Examples
Description
Get KEGG pathway information for annotated transcripts
Usage
1
getPathways(annotFile = "cvCnt.csv")
Arguments
annotFile
csv output file from annotateTranscripts
Value
Annotation results are written to path.csv, pthKo.csv
Examples
1
2
3
cvCnt <- system.file("extdata", "cvCnt2.csv",
package="Trans2Kegg")
getPathways(cvCnt)
croesel/Trans2Kegg documentation built on May 12, 2019, 3:11 p.m.
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Description Usage Arguments Value Examples
Description
Get KEGG pathway information for annotated transcripts
Usage
1 | getPathways(annotFile = "cvCnt.csv")
|
Arguments
annotFile |
csv output file from annotateTranscripts |
Value
Annotation results are written to path.csv, pthKo.csv
Examples
1 2 3 | cvCnt <- system.file("extdata", "cvCnt2.csv",
package="Trans2Kegg")
getPathways(cvCnt)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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