localBlast: Perform a local BLAST of DE transcripts
In croesel/Trans2Kegg: Annotate transcripts and predicted protein sequences
Description
Usage
Arguments
Value
Examples
Description
Perform a local BLAST of DE transcripts
Usage
1
localBlast(accessions, refTransFile, fastaOut = "deTrans.fa")
Arguments
accessions
A character vector of accessions from FASTA file to
be annotated
refTransFile
FASTA file of transcripts to be annotated
fastaOut
Output file for DE sequences
Value
DE Sequences are written to specified FASTA file
Examples
1
2
filepath <- system.file("extdata", "aiptasia.fa", package="Trans2Kegg")
localBlast(c("KXJ29317.1"), filepath)
croesel/Trans2Kegg documentation built on May 12, 2019, 3:11 p.m.
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Description Usage Arguments Value Examples
Description
Perform a local BLAST of DE transcripts
Usage
1 | localBlast(accessions, refTransFile, fastaOut = "deTrans.fa")
|
Arguments
accessions |
A character vector of accessions from FASTA file to be annotated |
refTransFile |
FASTA file of transcripts to be annotated |
fastaOut |
Output file for DE sequences |
Value
DE Sequences are written to specified FASTA file
Examples
1 2 | filepath <- system.file("extdata", "aiptasia.fa", package="Trans2Kegg")
localBlast(c("KXJ29317.1"), filepath)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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