getKegg: Get KEGG Ortholog info for BLAST Results
In croesel/Trans2Kegg: Annotate transcripts and predicted protein sequences
Description
Usage
Arguments
Value
Examples
Description
Get KEGG Ortholog info for BLAST Results
Usage
1
getKegg(blastResult, outFile = "annot.csv")
Arguments
blastResult
BLAST results from blastSequencesAws
outFile
csv output file for annotation results
Value
Annotation results are written to the csv file specified by outFile
Examples
1
2
3
4
outFile <- 'annot2.csv'
blastFile <- system.file("extdata", "blastResult.csv", package="Trans2Kegg")
blastResult <- read.csv(blastFile)
getKegg(blastResult, outFile)
croesel/Trans2Kegg documentation built on May 12, 2019, 3:11 p.m.
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Description Usage Arguments Value Examples
Description
Get KEGG Ortholog info for BLAST Results
Usage
1 | getKegg(blastResult, outFile = "annot.csv")
|
Arguments
blastResult |
BLAST results from blastSequencesAws |
outFile |
csv output file for annotation results |
Value
Annotation results are written to the csv file specified by outFile
Examples
1 2 3 4 | outFile <- 'annot2.csv'
blastFile <- system.file("extdata", "blastResult.csv", package="Trans2Kegg")
blastResult <- read.csv(blastFile)
getKegg(blastResult, outFile)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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