Man pages for croesel/Trans2Kegg
Annotate transcripts and predicted protein sequences
| annotateAWS | Annotate DE transcripts using NCBI BLAST AMI |
| annotateDE | Get KEGG information for DE transcripts |
| dot-blastSequencesToDataFrameAWS | BLAST Sequences to dataframe |
| dot-tryParseResultAws | Parse results from AWS BLAST |
| getKegg | Get KEGG Ortholog info for BLAST Results |
| getPathDetails | Get KEGG pathway details for one path |
| getPathways | Get KEGG pathway information for annotated transcripts |
| localBlast | Perform a local BLAST of DE transcripts |
| mergeAnnotations | Merge DE, BLAST, KEGG Info and filter |
| mergePaths | Merge pathway information and summarize DE counts |
