Files in ctlab/ClusDec
Clustering approach to solve complete Deconvolution problem
.gitignore
.travis.yml
DESCRIPTION
LICENCE
NAMESPACE
R/RcppExports.R
R/abDeconvolution.R
R/accuracy.R
R/clusterCosine.R
R/comb_new.R
R/countInside.R
R/datasetLiverBrainLung.R
R/dsa.R
R/dualplot.R
R/elimination.R
R/estimateNoise.R
R/geneCollapse.R
R/generateData.R
R/getDenseEnpoints.R
R/getSignatureGenes.R
R/heatmapClusters.R
R/hinge.R
R/hysime.R
R/markerRanks.R
R/markersFromDistance.R
R/nmf_fixes.R
R/pairwiseLinearFit.R
R/plotProportions.R
R/preprocess.R
R/proportionsLiverBrainLung.R
R/runSpici.R
R/simplex_utils.R
R/sisal.R
R/softNeg.R
R/ternarySearch.R
R/test.R
R/utils.R
R/vca.R
README.md
data/datasetLiverBrainLung.RData
data/proportionsLiverBrainLung.RData
man/chooseBest.Rd
man/clusdecAccuracy.Rd
man/clusterCosine.Rd
man/collapseGenes.Rd
man/countInside.Rd
man/datasetLiverBrainLung.Rd
man/deconvolve.Rd
man/deconvolveClusters.Rd
man/dim_error.Rd
man/dimensionality_reconstruction.Rd
man/dimensionality_reduction.Rd
man/estimateAdditiveNoise.Rd
man/estimateNoise.Rd
man/estimateSnr.Rd
man/evalClusters.Rd
man/fastDSA.Rd
man/geneMarkerStats.Rd
man/generateMixedData.Rd
man/getDenseEndpoints.Rd
man/hinge.Rd
man/hyperVolume.Rd
man/hysime.Rd
man/markersFromDist.Rd
man/pairwiseDemingRegression.Rd
man/pairwiseLinearFit.Rd
man/plotProportions.Rd
man/point_selection.Rd
man/point_selection_iea.Rd
man/preprocessDataset.Rd
man/preprocessGSE.Rd
man/proportionsLiverBrainLung.Rd
man/pureDsa.Rd
man/runDSA.Rd
man/sampleFromSimplexUniformly.Rd
man/simplexDensity.Rd
man/simplexEDensity.Rd
man/simplexRDensity.Rd
man/sisal.Rd
man/softNeg.Rd
man/vca.Rd
src/Makevars
src/Makevwars.win
src/RcppExports.cpp
src/fcnnls.cpp
src/fcnnls.h
src/methods.cpp
src/pairwiseLinearFit.cpp
src/reversed.cpp
src/utils.cpp
src/utils.h
vignettes/Clusdec-Tutorial.R
vignettes/Clusdec-Tutorial.Rmd
vignettes/Clusdec-Tutorial.html
vignettes/DeconvolutionOverview.R
vignettes/DeconvolutionOverview.Rmd
vignettes/DeconvolutionOverview.html
vignettes/DenseSimplex.Rmd
vignettes/libs/remark-css-0.0.1/example.css
vignettes/libs/remark-css/example.css
vignettes/rotation.gif
