Files in ctlab/ClusDec
Clustering approach to solve complete Deconvolution problem

.gitignore
.travis.yml
DESCRIPTION
LICENCE
NAMESPACE
R/RcppExports.R R/abDeconvolution.R R/accuracy.R R/clusterCosine.R R/comb_new.R R/countInside.R R/datasetLiverBrainLung.R R/dsa.R R/dualplot.R R/elimination.R R/estimateNoise.R R/geneCollapse.R R/generateData.R R/getDenseEnpoints.R R/getSignatureGenes.R R/heatmapClusters.R R/hinge.R R/hysime.R R/markerRanks.R R/markersFromDistance.R R/nmf_fixes.R R/pairwiseLinearFit.R R/plotProportions.R R/preprocess.R R/proportionsLiverBrainLung.R R/runSpici.R R/simplex_utils.R R/sisal.R R/softNeg.R R/ternarySearch.R R/test.R R/utils.R R/vca.R README.md
data/datasetLiverBrainLung.RData
data/proportionsLiverBrainLung.RData
man/chooseBest.Rd man/clusdecAccuracy.Rd man/clusterCosine.Rd man/collapseGenes.Rd man/countInside.Rd man/datasetLiverBrainLung.Rd man/deconvolve.Rd man/deconvolveClusters.Rd man/dim_error.Rd man/dimensionality_reconstruction.Rd man/dimensionality_reduction.Rd man/estimateAdditiveNoise.Rd man/estimateNoise.Rd man/estimateSnr.Rd man/evalClusters.Rd man/fastDSA.Rd man/geneMarkerStats.Rd man/generateMixedData.Rd man/getDenseEndpoints.Rd man/hinge.Rd man/hyperVolume.Rd man/hysime.Rd man/markersFromDist.Rd man/pairwiseDemingRegression.Rd man/pairwiseLinearFit.Rd man/plotProportions.Rd man/point_selection.Rd man/point_selection_iea.Rd man/preprocessDataset.Rd man/preprocessGSE.Rd man/proportionsLiverBrainLung.Rd man/pureDsa.Rd man/runDSA.Rd man/sampleFromSimplexUniformly.Rd man/simplexDensity.Rd man/simplexEDensity.Rd man/simplexRDensity.Rd man/sisal.Rd man/softNeg.Rd man/vca.Rd
src/Makevars
src/Makevwars.win
src/RcppExports.cpp
src/fcnnls.cpp
src/fcnnls.h
src/methods.cpp
src/pairwiseLinearFit.cpp
src/reversed.cpp
src/utils.cpp
src/utils.h
vignettes/Clusdec-Tutorial.R vignettes/Clusdec-Tutorial.Rmd
vignettes/Clusdec-Tutorial.html
vignettes/DeconvolutionOverview.R vignettes/DeconvolutionOverview.Rmd
vignettes/DeconvolutionOverview.html
vignettes/DenseSimplex.Rmd
vignettes/libs/remark-css-0.0.1/example.css
vignettes/libs/remark-css/example.css
vignettes/rotation.gif
ctlab/ClusDec documentation built on Sept. 23, 2017, 10:24 p.m.