generateMixedData: Generate mixed data with or without noise

Description Usage Arguments

Description

Generates mixed data with or without noise under assumption of linear model

Usage

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generateMixedData(samples = 40, genes = 12000, cellTypes = 3,
  bias = NULL, pureGenes = 0, noiseDeviation = 0, removeAngles = F,
  cutCoef = 0.85, removeBorders = F, borderShift = 0.25)

Arguments

samples

number of samples

genes

number of genes

cellTypes

number of cell types

bias

if not null bias should be a number in between 0 and 1, one of cell types presented in mix will be more abundunt and one cell type will be less abundunt

pureGenes

number of genes which are not noisy

noiseDeviation

standart deviation of normally distributed noise value

removeAngles

if TRUE there will be no signature genes in the mix (simplex corners will be removed)

removeBorders

if TRUE where will be no genes close to simplex border

borderShift

number in between 0 and 1, every value in basis is guaranteed to be at least borderShift

cutCoeff

corners are removed as points that lie outside of cellTypes-dimensional sphere with radius of cutCoef


ctlab/ClusDec documentation built on May 14, 2019, 12:29 p.m.