Generates mixed data with or without noise under assumption of linear model
1 2 3 | generateMixedData(samples = 40, genes = 12000, cellTypes = 3,
bias = NULL, pureGenes = 0, noiseDeviation = 0, removeAngles = F,
cutCoef = 0.85, removeBorders = F, borderShift = 0.25)
|
samples |
number of samples |
genes |
number of genes |
cellTypes |
number of cell types |
bias |
if not null bias should be a number in between 0 and 1, one of cell types presented in mix will be more abundunt and one cell type will be less abundunt |
pureGenes |
number of genes which are not noisy |
noiseDeviation |
standart deviation of normally distributed noise value |
removeAngles |
if TRUE there will be no signature genes in the mix (simplex corners will be removed) |
removeBorders |
if TRUE where will be no genes close to simplex border |
borderShift |
number in between 0 and 1, every value in basis is guaranteed to be at least borderShift |
cutCoeff |
corners are removed as points that lie outside of cellTypes-dimensional sphere with radius of cutCoef |
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