Man pages for ctlab/ClusDec
Clustering approach to solve complete Deconvolution problem
| chooseBest | Choose best combination of clusters and deconvolve |
| clusdecAccuracy | Accuracy for all combination of clusters |
| clusterCosine | Cosine simillarity clustering |
| collapseGenes | Collapse Genes |
| countInside | Check how many points are inside of given simplex |
| datasetLiverBrainLung | GSE19830 dataset |
| deconvolve | Deconvolution by it self |
| deconvolveClusters | Deconvolution by given set of clusters |
| dimensionality_reconstruction | Dimensionality reconstruction |
| dimensionality_reduction | SVD based dimensionality reduction |
| dim_error | Out of space error |
| estimateAdditiveNoise | Estimate additive noise |
| estimateNoise | Noise estimation |
| estimateSnr | Signal To Noise estimation |
| evalClusters | Evaluate accuracy of combination |
| fastDSA | Fast DSA algorithm implementation |
| geneMarkerStats | Get gene stats |
| generateMixedData | Generate mixed data with or without noise |
| getDenseEndpoints | getting simplex endpoints |
| hinge | Hinge function |
| hyperVolume | Compute the volume of the given simplex |
| hysime | HySime |
| markersFromDist | Title |
| pairwiseDemingRegression | Pairwise Deming regression fits between genes |
| pairwiseLinearFit | Pairwise linear fits between genes |
| plotProportions | Draw a plot of estimated proportions |
| point_selection | Selection of points at the ends of simplex using VCA... |
| point_selection_iea | Selection of points at the ends of simplex using IEA... |
| preprocessDataset | Preprocess Dataset |
| preprocessGSE | Preprocess GSE Dataset |
| proportionsLiverBrainLung | GSE19830 proportions |
| pureDsa | DSA algorithm implementation for pure points |
| runDSA | Run DSA by clusters |
| sampleFromSimplexUniformly | Generation of points uniformly distributed on k-dimensional... |
| simplexDensity | Check how many points are inside of given simplex |
| simplexEDensity | Check how many points are inside of given simplex |
| simplexRDensity | Root density |
| sisal | SISAL algorithm |
| softNeg | Soft negative score |
| vca | Title |
