collapseDataset: Collapse dataset
In ctlab/phantasus: Visual and interactive gene expression analysis

collapseDataset

R Documentation

Collapse dataset

Description

collapseDataset performs a collapse action on expression set

Usage

collapseDataset(
  es,
  isRows = TRUE,
  selectOne = FALSE,
  fn,
  fields,
  removeEmpty = TRUE
)

Arguments

`es`	Expression set
`isRows`	Work with rows. False if columns (default True - row mode)
`selectOne`	select best match or merge duplicates
`fn`	select/merge function
`fields`	fields to unique on
`removeEmpty`	remove unannotated genes

Value

Nothing. Collapsed dataset will be assigned to es in environment

Examples

## Not run: 
es <- getGSE('GSE53986')[[1]]
collapseDataset(es, isRows = TRUE, selectOne = TRUE,
fn = mean, fields = c('Gene ID', 'Gene symbol'))

## End(Not run)

ctlab/phantasus documentation built on April 19, 2024, 7:35 a.m.